View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_3 (Length: 573)
Name: NF8651_low_3
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 45208873 - 45209420
Alignment:
| Q |
11 |
catcatcaaagcaaggagagaaacctcttgtgtggaacagccattaggtaaccgtgggtaagcgttgggtggtggcatactacattcatcaccgttgaaa |
110 |
Q |
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| T |
45208873 |
catcatcaaagcaaggagagaaacctcttgtgtggaacagccattaggtaaccgtgggtaagcgtcgggtggtggcatactacattcatcaccgttgaaa |
45208972 |
T |
|
| Q |
111 |
taaatcttctccggaaaaccccagccgctacggaaactaaaacttgatttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45208973 |
taaatcttctccggaaaaccccagccgctacggaaactaaaacttgatttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagctt |
45209072 |
T |
|
| Q |
211 |
gcatgagtacatcattgaaaaatttaactccccaaagcattgcagtatcatctgttaagaccagtttttcattagtacatcattga--tttatattgata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45209073 |
gcatgagtacatcattgaaaaatttaactccccaaagcattacagtatcatctgttaagaccagtttttcattagtacatcattgatttttatattgata |
45209172 |
T |
|
| Q |
309 |
agatagcaaaacc-ttgaatataatgaacaaacacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatt |
407 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209173 |
agatagcaaaacctttgaatataatgaacaaacacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatt |
45209272 |
T |
|
| Q |
408 |
tatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagta |
507 |
Q |
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| T |
45209273 |
tatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagta |
45209372 |
T |
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| Q |
508 |
gttatgcttaatgtgccagtgaactttaatcggacacatatgcctagt |
555 |
Q |
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| T |
45209373 |
gttatacttaatgtgccagtgaactttaatcggacacatatgcctagt |
45209420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 339 - 555
Target Start/End: Complemental strand, 5551199 - 5550983
Alignment:
| Q |
339 |
acacaaacttacttgttgatccatatggagctaatgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgtt |
438 |
Q |
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|||||||||||||| | || || || |||| || || ||| ||||| ||||||||| ||| |||| || ||||| ||||||||||||||||||| ||| |
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| T |
5551199 |
acacaaacttacttatcgacccgtaaggagttattggttttgagttgaaactgaaaagttgagtcagattgtcaaagtttggatgttgaacaaccaagtt |
5551100 |
T |
|
| Q |
439 |
ccagtctgagtaattctttctgtaattgaaattaaaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatc |
538 |
Q |
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||| |||||||||||| | ||||||||||| ||| ||| |||| ||| |||||||||||||| | ||||||| |||||||||||||||||||| || |
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| T |
5551099 |
ccaatctgagtaattcatcctgtaattgaagttagtaacagtaacctttacgcgccaatactccttgtagttaagcttaatgtgccagtgaactcggata |
5551000 |
T |
|
| Q |
539 |
ggacacatatgcctagt |
555 |
Q |
| |
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||||||||||| ||||| |
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| T |
5550999 |
ggacacatatgactagt |
5550983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 5551792 - 5551688
Alignment:
| Q |
164 |
ctttcgaaaaagtagctccgactgtacgttaccattaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtatcatct |
263 |
Q |
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|||||| ||||||||||| || ||||| |||||| ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
5551792 |
ctttcggaaaagtagctctgattgtacattaccaataggaccagcttgcatgagtaaatcattgtagaatttaactccccaaagcattgctgtatcatct |
5551693 |
T |
|
| Q |
264 |
gttaa |
268 |
Q |
| |
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||||| |
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| T |
5551692 |
gttaa |
5551688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 555
Target Start/End: Original strand, 5539650 - 5539832
Alignment:
| Q |
373 |
tgatttgtagttgtaactgaaaatttgtgtcaatttatcaaaatttggatgttgaacaaccacgttccagtctgagtaattctttctgtaattgaaatta |
472 |
Q |
| |
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||||||||||||| ||||| ||| ||| |||| || | ||| |||||||| |||||||||| |||||| |||||||||||| | |||||||| |||||| |
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| T |
5539650 |
tgatttgtagttgaaactggaaagttgagtcagattgtaaaagtttggatgctgaacaaccaagttccaatctgagtaattcatcctgtaatttaaatta |
5539749 |
T |
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| Q |
473 |
aaaacggtaatcttcacgcgccaatactcatagtagttatgcttaatgtgccagtgaactttaatcggacacatatgcctagt |
555 |
Q |
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|| || | ||| |||||||||||||| | || ||| | ||||||||||||||||||| || ||||||||||| ||||| |
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| T |
5539750 |
gtaatagtgacctttacgcgccaatactccttgtcattaagattaatgtgccagtgaacttggataggacacatatgactagt |
5539832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 5539052 - 5539161
Alignment:
| Q |
159 |
ttattctttcgaaaaagtagctccgactgtacgttaccattaggaccagcttgcatgagtacatcattgaaaaatttaactccccaaagcattgcagtat |
258 |
Q |
| |
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|||| |||||| |||| |||||| | ||||| |||||| ||||||| ||||||||||||| ||||||| ||| |||||||||||||| ||||| | || |
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| T |
5539052 |
ttatcctttcggaaaattagctctaattgtacattaccagtaggaccggcttgcatgagtaaatcattgtaaagtttaactccccaaatcattgttgcat |
5539151 |
T |
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| Q |
259 |
catctgttaa |
268 |
Q |
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|||||||||| |
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| T |
5539152 |
catctgttaa |
5539161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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