View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8651_low_31 (Length: 222)

Name: NF8651_low_31
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8651_low_31
NF8651_low_31
[»] chr7 (6 HSPs)
chr7 (1-222)||(4190046-4190281)
chr7 (1-69)||(4193166-4193234)
chr7 (2-73)||(4247254-4247325)
chr7 (3-69)||(4234677-4234743)
chr7 (3-69)||(4211013-4211079)
chr7 (9-67)||(4251696-4251754)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4190046 - 4190281
Alignment:
Q  1 ggttgaaattggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaaggactatgctccaattgattttgggatgcaagtgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4190046 ggttgaaattggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaaggactatgctccaattgattgtgggatgcaagtgca 4190145  T
Q  101 atgtgttagataataaga--------------tgtgggatctttttagggtttaagtgaattgagtccttttagattttattatataatattcacttgta 186  Q
    ||||||||||||||||||              ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4190146 atgtgttagataataagatgtcgggctcatgttgttggatctttttagggtttaagtgaatcgagtccttttagattttattatataatattcacttgta 4190245  T
Q  187 aacctaattttaataagttatgcttttgatattatt 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  4190246 aacctaattttaataagttatgcttttgatattatt 4190281  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4193166 - 4193234
Alignment:
Q  1 ggttgaaattggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaaggact 69  Q
    ||||||| |||  |||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||    
T  4193166 ggttgaagttgagcttgttcttaataagcttgtaatggatctctttagcagtttcttttttgaaggact 4193234  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 4247254 - 4247325
Alignment:
Q  2 gttgaaattggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaaggactatgc 73  Q
    |||||| |||| |||||||||||||| ||||||||| || ||||||||| |||||||| ||||||| |||||    
T  4247254 gttgaagttgggcttgttcttaataaacatgtaatgaatttctttagcactttgtttcatgaaggattatgc 4247325  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 4234677 - 4234743
Alignment:
Q  3 ttgaaattggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaaggact 69  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||| | ||||||| ||||||||||    
T  4234677 ttgaagttgggcttgttcttaataaccatgtaatgaatctctttagaactttgtttgttgaaggact 4234743  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 4211013 - 4211079
Alignment:
Q  3 ttgaaattggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaaggact 69  Q
    ||||| |||| |||||||| ||||| |||||||||||||||||||  |  |||||||||||||||||    
T  4211013 ttgaagttgggcttgttctaaataaacatgtaatggatctctttaaaacgttgtttcttgaaggact 4211079  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 4251696 - 4251754
Alignment:
Q  9 ttggtcttgttcttaataagcatgtaatggatctctttagcaatttgtttcttgaagga 67  Q
    |||| |||| ||||||||| | |||||||||| ||||||||| ||||||||||||||||    
T  4251696 ttgggcttgctcttaataaacctgtaatggatatctttagcactttgtttcttgaagga 4251754  T

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