View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_33 (Length: 213)
Name: NF8651_low_33
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 683203 - 683013
Alignment:
| Q |
12 |
agaagaaggaaagaaaatg-gaagtttgtttgtagtaagaagtgattatgaaaagtgcttatgcgaggaaagaag-----tgagaaagggttttgaatgg |
105 |
Q |
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| T |
683203 |
agaagaaggaaagaaaatgtgaagtttgtttgtagtaagaagtgattatgaaaagtgcttatgcgaggaaagaagagaagtgagaaagggttttgaatgg |
683104 |
T |
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| Q |
106 |
gtttttggagatatattgagctagcgagtggtaaaatgagaagaagagttgaaataaatnnnnnnngtgtgagtgagtgacccttctactg |
196 |
Q |
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| T |
683103 |
gtttttggagatatattgagctagcgagtggtacaatgagaagaagagttgaaataaataaaaaaagtgtgagtgagtgaccattctactg |
683013 |
T |
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