View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8651_low_4 (Length: 566)

Name: NF8651_low_4
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8651_low_4
NF8651_low_4
[»] chr1 (4 HSPs)
chr1 (139-415)||(14506958-14507235)
chr1 (480-557)||(14506816-14506893)
chr1 (21-71)||(14484575-14484625)
chr1 (139-175)||(14484470-14484506)
[»] chr6 (4 HSPs)
chr6 (176-413)||(28522047-28522277)
chr6 (176-325)||(28294646-28294795)
chr6 (176-325)||(28517278-28517427)
chr6 (506-557)||(28521951-28522002)
[»] chr5 (5 HSPs)
chr5 (176-368)||(19409771-19409963)
chr5 (235-415)||(42133564-42133745)
chr5 (480-546)||(42133810-42133875)
chr5 (480-548)||(23968312-23968379)
chr5 (379-415)||(23968444-23968480)
[»] chr7 (6 HSPs)
chr7 (235-415)||(18484023-18484204)
chr7 (235-368)||(18479236-18479370)
chr7 (480-548)||(18483890-18483958)
chr7 (336-415)||(38849694-38849774)
chr7 (480-557)||(38849552-38849629)
chr7 (326-368)||(24280256-24280299)
[»] chr8 (3 HSPs)
chr8 (235-415)||(21031991-21032172)
chr8 (235-359)||(19873841-19873965)
chr8 (480-557)||(21031855-21031932)
[»] scaffold0933 (1 HSPs)
scaffold0933 (241-359)||(3897-4018)
[»] scaffold1939 (1 HSPs)
scaffold1939 (235-308)||(1150-1223)
[»] scaffold0570 (1 HSPs)
scaffold0570 (318-368)||(2959-3009)
[»] chr3 (1 HSPs)
chr3 (352-413)||(17483017-17483078)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 139 - 415
Target Start/End: Complemental strand, 14507235 - 14506958
Alignment:
Q  139 ttgacccatacagaaagaaaagacaagtagtggtatttattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtaga 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14507235 ttgacccatacagaaagaaaagacaagtagtggtatttattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtaga 14507136  T
Q  239 ggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaattaag 338  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14507135 gtagcaattctctagttgctagttcacagtatttagcatactttccctctcttgtataaatatcattgtactgtactcttttcatctaatgagaattaag 14507036  T
Q  339 agtttcattcatttctct-ctagtcataatatggtatcagatttctctctcttgagagagaagttccgatcctaaccg 415  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14507035 agtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccg 14506958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 14506893 - 14506816
Alignment:
Q  480 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtcacaatcggtgatgtccatctc 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||    
T  14506893 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtttcaatcggtgattttcatctc 14506816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 14484625 - 14484575
Alignment:
Q  21 tttgatagcattgtgatataaattggggaccgtatggacactcatatacaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14484625 tttgatagcattgtgatataaattggggaccgtatggacactcacatacaa 14484575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 14484506 - 14484470
Alignment:
Q  139 ttgacccatacagaaagaaaagacaagtagtggtatt 175  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  14484506 ttgaccaatacaaaaagaaaagacaagtagtggtatt 14484470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 176 - 413
Target Start/End: Complemental strand, 28522277 - 28522047
Alignment:
Q  176 tattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtagaggagcaattctctagttgctagttcacagtacttagc 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  28522277 tattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtagagtagcaattctctagtttctagttcacagtacttagc 28522178  T
Q  276 atactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaattaagagtttcattcatttctctctagtcataatatggtatc 375  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  28522177 atactttccctcatttgtataaatatcattgtactgcactcttttcatctaatgagaattaagagtttcattcatttc-------tcataatatggtatc 28522085  T
Q  376 agatttctctctcttgagagagaagttccgatcctaac 413  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28522084 agatttctctctcatgagagagaagttccgatcctaac 28522047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 176 - 325
Target Start/End: Original strand, 28294646 - 28294795
Alignment:
Q  176 tattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtagaggagcaattctctagttgctagttcacagtacttagc 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  28294646 tattacattttatgttttagctttactattagagataacttgtggagcaagttatctagtagagtagcaattctctagttgctagttcacagtacttagc 28294745  T
Q  276 atactttccctctcttgtataaatatcattgtactgcactcttttcatct 325  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  28294746 atactttccctctattgtataaatatcattgtactacactcttttcatct 28294795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 176 - 325
Target Start/End: Complemental strand, 28517427 - 28517278
Alignment:
Q  176 tattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtagaggagcaattctctagttgctagttcacagtacttagc 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  28517427 tattacattttatgttttagctttactattagagataacttgtggagcaagttatctagtagagtagcaattctctagttgctagttcacagtacttagc 28517328  T
Q  276 atactttccctctcttgtataaatatcattgtactgcactcttttcatct 325  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  28517327 atactttccctctattgtataaatatcattgtactacactcttttcatct 28517278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 557
Target Start/End: Complemental strand, 28522002 - 28521951
Alignment:
Q  506 ctctttgcttctctacttcctctttcttgtcacaatcggtgatgtccatctc 557  Q
    ||||||||||||||||||||| ||||||||  ||||||||||| | ||||||    
T  28522002 ctctttgcttctctacttcctttttcttgtttcaatcggtgattttcatctc 28521951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 176 - 368
Target Start/End: Complemental strand, 19409963 - 19409771
Alignment:
Q  176 tattacattttatgttttagctttactattagagataacttgtggagcaagttatccagtagaggagcaattctctagttgctagttcacagtacttagc 275  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  19409963 tattacattttatgttttagctttattataagagataacttgtggagcaagttatccagtagagtagcaattctctagtttctagttcacggtacttagc 19409864  T
Q  276 atactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaattaagagtttcattcatttctctctagtcataata 368  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  19409863 atactttccctcacttgtataaatatcattgtactgcactcttttcatcctatgagaattaagagtttcattcatttctctctaatcataata 19409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 235 - 415
Target Start/End: Original strand, 42133564 - 42133745
Alignment:
Q  235 tagaggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaat 334  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |  ||||||||||    
T  42133564 tagagtagcaattctctagctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat 42133663  T
Q  335 taagagtttcattcatttctct-ctagtcataatatggtatcagatttctctctcttgagagagaagttccgatcctaaccg 415  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42133664 taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccg 42133745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 42133810 - 42133875
Alignment:
Q  480 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtcacaatcggtg 546  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||||    
T  42133810 caccattgttacttgcagaagctctt-tctttgcttctttacttcctctttcttgtttcaatcggtg 42133875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 548
Target Start/End: Complemental strand, 23968379 - 23968312
Alignment:
Q  480 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtcacaatcggtgat 548  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||  ||||| |||||    
T  23968379 caccattgttacttgcagaagcttttctatttgcttctctgcttcct-tttcttgtttcaatcagtgat 23968312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 23968480 - 23968444
Alignment:
Q  379 tttctctctcttgagagagaagttccgatcctaaccg 415  Q
    |||||||||| || |||||||||||||||||||||||    
T  23968480 tttctctctcatgtgagagaagttccgatcctaaccg 23968444  T

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Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 235 - 415
Target Start/End: Complemental strand, 18484204 - 18484023
Alignment:
Q  235 tagaggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaat 334  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |  ||||||||||    
T  18484204 tagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgacataatgagaat 18484105  T
Q  335 taagagtttcattcatttctctct-agtcataatatggtatcagatttctctctcttgagagagaagttccgatcctaaccg 415  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18484104 taagagtttcattcatttctctctaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccg 18484023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 235 - 368
Target Start/End: Complemental strand, 18479370 - 18479236
Alignment:
Q  235 tagaggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaat 334  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||| |  ||||||||||    
T  18479370 tagagtagcaattctctagttgctagttcacagtacttagcatacttttcctcttttgtataaataccattgtactgtactcttttgacataatgagaat 18479271  T
Q  335 taagagtttcattcatttctctct-agtcataata 368  Q
    |||||||||||||||||||||||| ||||||||||    
T  18479270 taagagtttcattcatttctctctaagtcataata 18479236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 480 - 548
Target Start/End: Complemental strand, 18483958 - 18483890
Alignment:
Q  480 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtcacaatcggtgat 548  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18483958 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtttcaatcggtgat 18483890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 38849774 - 38849694
Alignment:
Q  336 aagagtttcattcattt-ctctctagtcataatatggtatcagatttctctctcttgagagagaagttccgatcctaaccg 415  Q
    ||||| ||||||||||| ||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38849774 aagagattcattcattttctctcttctgataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccg 38849694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 38849629 - 38849552
Alignment:
Q  480 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtcacaatcggtgatgtccatctc 557  Q
    ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||  |||| |||||| | ||||||    
T  38849629 caccattgttacttgtagaagctcttctctttgcttctctacattctctttcttgtttcaattggtgattttcatctc 38849552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 24280299 - 24280256
Alignment:
Q  326 aatgagaattaagagtttcattcatttctctct-agtcataata 368  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  24280299 aatgagaattaagagtttcattcatttctctctaagtcataata 24280256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 7e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 235 - 415
Target Start/End: Complemental strand, 21032172 - 21031991
Alignment:
Q  235 tagaggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaat 334  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||  ||||||||||    
T  21032172 tagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttcagataatgagaat 21032073  T
Q  335 taagagtttcattcatttctctct-agtcataatatggtatcagatttctctctcttgagagagaagttccgatcctaaccg 415  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  21032072 taagagtttcattcatttctctctaagtcatattatggtatcagatttctctctcatgagagagaagttccgattctaaccg 21031991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 235 - 359
Target Start/End: Original strand, 19873841 - 19873965
Alignment:
Q  235 tagaggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcatctaatgagaat 334  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |  ||||||||||    
T  19873841 tagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctttttagataatgagaat 19873940  T
Q  335 taagagtttcattcatttctctcta 359  Q
    |||||||||||||||||||||||||    
T  19873941 taagagtttcattcatttctctcta 19873965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 480 - 557
Target Start/End: Complemental strand, 21031932 - 21031855
Alignment:
Q  480 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtcacaatcggtgatgtccatctc 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| | ||||||    
T  21031932 caccattgttacttgcagaagctcttctctttgcttctctacttcctctttcttgtttcaatcggtgattttcatctc 21031855  T

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Target: scaffold0933 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 3897 - 4018
Alignment:
Q  241 agcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgtactgcactcttttcat---ctaatgagaattaa 337  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||||||||| |||||||||||     ||||||||||||    
T  3897 agcaattctctagttgctagttcacagtaattagcatactttccctcttttatataaataccattgtactgtactcttttcataacaaaatgagaattaa 3996  T
Q  338 gagtttcattcatttctctcta 359  Q
    ||||||||||||||||||||||    
T  3997 gagtttcattcatttctctcta 4018  T

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Target: scaffold1939 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 1150 - 1223
Alignment:
Q  235 tagaggagcaattctctagttgctagttcacagtacttagcatactttccctctcttgtataaatatcattgta 308  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  1150 tagagtagcaattctctagctgctagttcacagtacttagcatactttccctcttttgtataaataccattgta 1223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 2959 - 3009
Alignment:
Q  318 tttcatctaatgagaattaagagtttcattcatttctctctagtcataata 368  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  2959 tttcatctaatgagaattaagagattcattcatttctctctagttataata 3009  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 413
Target Start/End: Complemental strand, 17483078 - 17483017
Alignment:
Q  352 tctctctagtcataatatggtatcagatttctctctcttgagagagaagttccgatcctaac 413  Q
    |||||||||| |||||||||||| |||||||||||||  | ||||||||||  |||||||||    
T  17483078 tctctctagtgataatatggtattagatttctctctcccgtgagagaagttttgatcctaac 17483017  T

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