View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_8 (Length: 442)
Name: NF8651_low_8
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 1786940 - 1787361
Alignment:
| Q |
10 |
atactactctcgcccaagttagtttgaattaaaaatgtaaagacaatatattcggaaaatacttaggtgtaactatatttttctttcctnnnnnnntgta |
109 |
Q |
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| T |
1786940 |
atactactctcgtccaagttagtttgaattaaaaatgtaaagacaatatattcggaaaatacttaggtataactatatttttctttcctaaaaaaatgta |
1787039 |
T |
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| Q |
110 |
ctttattcaattcnnnnnnnnnnnnnnnnnnnnncaaatatgtatttgtgattaaatggtgtatgtatcaaaatgtttgtgaccacataagacttgtata |
209 |
Q |
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| T |
1787040 |
ctttattcaattcttttattttttataactttttcaaatatgtatttgtgattaaatggtgtatgtatcaaaatgtttgtgaccacataagacttgtata |
1787139 |
T |
|
| Q |
210 |
tgtgactaaatggtgtatctaaatgtttgtgaccacacaagactagggttcctgcaattagga-gaacccacattcacatagtctgatatcggaaatcgt |
308 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||| |
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| T |
1787140 |
tgtgactaaatgatgtatctaaatgtttgtgaccatacaagactagggttcctgcaattaggaggaacccacattcacgtagtctgatattgggaatcgt |
1787239 |
T |
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| Q |
309 |
ctaatcttaattgaatggtcatcttgatcg---aatcaagattatcctgaatgcgtgactgcgtacttttgttgagcgtagtaaatctagtttgtataga |
405 |
Q |
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|| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1787240 |
ctgatcttgattgaatggtcatcttgatcgaacaatcaagattatcctgaatgcgtgactgcgtacttttgttgaccgtaataaatctagtttgtataga |
1787339 |
T |
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| Q |
406 |
tacaaagaaaatagactgatgt |
427 |
Q |
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| T |
1787340 |
tacaaagaaaatagagtgatgt |
1787361 |
T |
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