View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8652_low_1 (Length: 350)
Name: NF8652_low_1
Description: NF8652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8652_low_1 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 40 - 350
Target Start/End: Complemental strand, 27603954 - 27603640
Alignment:
| Q |
40 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagatcattaatagtacacccagcacctctcaaaagaaaagccccacatccaaacagagcca |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27603954 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagatcattaatagtacacccagcacctctcaaaagaaaagccccacatccaaacagagcca |
27603855 |
T |
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| Q |
140 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaatgagagaacaagcttaaaacggagcatttatactgac |
239 |
Q |
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| T |
27603854 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaaagagagaacaagcttaaaacggagcatttatactgac |
27603755 |
T |
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| Q |
240 |
agtaaataccccctcccctgttatattgcttttaacttcatatttatgctgtatacatatatgtattcat----acatgcgattatgtcaatatatgaaa |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27603754 |
agtaaataccccctcccctgttatattgcttttaacttcatatttatgctgtatacatatatgtattcatacatacatgcgattatgtcaatatatgaaa |
27603655 |
T |
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| Q |
336 |
aggagctccgtggcc |
350 |
Q |
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||||||||| ||||| |
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| T |
27603654 |
aggagctccatggcc |
27603640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 40 - 350
Target Start/End: Original strand, 52210382 - 52210702
Alignment:
| Q |
40 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagatcattaatagtacacccagcacctctcaaaagaaaagccccacatccaaacagagcca |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52210382 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagaacattaata---cacccagcacctctcaaaagaaaagccccgcatccaaacagagcca |
52210478 |
T |
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| Q |
140 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaatgagagaacaagcttaaaacggagcatttatactgac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
52210479 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaaagagagaacaagcttaaaatggagcatttatactgac |
52210578 |
T |
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| Q |
240 |
agtaaataccccctcccctgt-------------tatattgcttttaacttcatatttatgctgtatacatatatgtattcatacatgcgattatgtcaa |
326 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
52210579 |
agtaaataccccctcctctgttataggaaaaaagtatattgcttttaacttcatatttatgttgtatacaaatatgtattcatacatgcgattatgtcaa |
52210678 |
T |
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| Q |
327 |
tatatgaaaaggagctccgtggcc |
350 |
Q |
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| |||||||||||||||| ||||| |
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| T |
52210679 |
tgtatgaaaaggagctccatggcc |
52210702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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