View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8652_low_2 (Length: 325)

Name: NF8652_low_2
Description: NF8652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8652_low_2
NF8652_low_2
[»] chr4 (15 HSPs)
chr4 (28-180)||(52191200-52191352)
chr4 (32-180)||(44275749-44275897)
chr4 (220-296)||(52191085-52191160)
chr4 (21-180)||(49243847-49244006)
chr4 (21-180)||(46192391-46192551)
chr4 (21-180)||(21390955-21391114)
chr4 (21-180)||(6112662-6112821)
chr4 (21-180)||(7217797-7217957)
chr4 (21-180)||(45829257-45829416)
chr4 (27-180)||(51038801-51038956)
chr4 (21-178)||(35544944-35545102)
chr4 (21-180)||(3672306-3672466)
chr4 (21-180)||(28093095-28093255)
chr4 (19-119)||(54849818-54849918)
chr4 (90-165)||(36157936-36158012)
[»] chr6 (4 HSPs)
chr6 (21-179)||(14022966-14023124)
chr6 (32-180)||(24208487-24208635)
chr6 (21-180)||(3118046-3118206)
chr6 (21-140)||(3986945-3987064)
[»] chr7 (22 HSPs)
chr7 (21-180)||(13108180-13108338)
chr7 (33-180)||(5811163-5811310)
chr7 (21-180)||(36346564-36346723)
chr7 (32-180)||(45782659-45782808)
chr7 (32-180)||(46475067-46475216)
chr7 (21-180)||(7699882-7700042)
chr7 (21-180)||(7700080-7700240)
chr7 (21-180)||(7700278-7700438)
chr7 (21-180)||(7700476-7700636)
chr7 (21-180)||(34828097-34828256)
chr7 (21-178)||(21807324-21807481)
chr7 (21-180)||(34108458-34108618)
chr7 (21-180)||(23980163-23980322)
chr7 (21-180)||(31148322-31148481)
chr7 (21-180)||(26972202-26972362)
chr7 (21-180)||(28307494-28307654)
chr7 (32-180)||(42220963-42221111)
chr7 (21-180)||(36957461-36957619)
chr7 (105-180)||(42950036-42950111)
chr7 (28-180)||(38321048-38321199)
chr7 (21-167)||(30887732-30887878)
chr7 (24-118)||(20086690-20086784)
[»] chr5 (13 HSPs)
chr5 (26-180)||(31800595-31800749)
chr5 (21-180)||(13347160-13347320)
chr5 (21-180)||(39370959-39371119)
chr5 (32-177)||(27553376-27553521)
chr5 (21-180)||(2237308-2237468)
chr5 (21-140)||(1815656-1815775)
chr5 (26-179)||(4300544-4300697)
chr5 (21-180)||(40887941-40888101)
chr5 (21-180)||(41003850-41004008)
chr5 (27-133)||(17225355-17225461)
chr5 (60-180)||(42683670-42683791)
chr5 (21-180)||(14831576-14831736)
chr5 (21-75)||(33404541-33404595)
[»] chr8 (13 HSPs)
chr8 (21-180)||(33726043-33726203)
chr8 (21-180)||(30432371-30432530)
chr8 (37-179)||(38845023-38845165)
chr8 (21-180)||(36189248-36189406)
chr8 (21-180)||(12665376-12665537)
chr8 (21-180)||(42162630-42162790)
chr8 (21-180)||(18184585-18184744)
chr8 (21-180)||(10203696-10203856)
chr8 (21-166)||(44081812-44081958)
chr8 (36-180)||(31318852-31318997)
chr8 (21-75)||(31552-31606)
chr8 (90-180)||(3690602-3690692)
chr8 (21-75)||(42668886-42668940)
[»] chr2 (12 HSPs)
chr2 (21-180)||(37498862-37499024)
chr2 (21-180)||(44958145-44958305)
chr2 (21-180)||(16089854-16090012)
chr2 (21-180)||(33732601-33732760)
chr2 (21-177)||(3830900-3831054)
chr2 (21-180)||(36315593-36315753)
chr2 (21-180)||(37914236-37914395)
chr2 (89-180)||(41188869-41188961)
chr2 (21-180)||(6376238-6376392)
chr2 (23-152)||(14573029-14573159)
chr2 (34-119)||(24137153-24137238)
chr2 (96-178)||(13535751-13535834)
[»] chr1 (10 HSPs)
chr1 (21-178)||(19258674-19258831)
chr1 (32-180)||(28647396-28647544)
chr1 (21-180)||(34307137-34307297)
chr1 (21-178)||(39249864-39250022)
chr1 (21-180)||(2509056-2509216)
chr1 (21-180)||(46901734-46901894)
chr1 (28-116)||(9642929-9643018)
chr1 (21-72)||(10146998-10147049)
chr1 (44-72)||(8848961-8848989)
chr1 (36-72)||(29099863-29099899)
[»] chr3 (18 HSPs)
chr3 (21-180)||(21559593-21559753)
chr3 (21-180)||(39467101-39467260)
chr3 (21-180)||(20856153-20856310)
chr3 (21-180)||(30735495-30735654)
chr3 (21-180)||(34749897-34750057)
chr3 (21-180)||(51339783-51339940)
chr3 (21-179)||(22894712-22894870)
chr3 (21-132)||(53638167-53638278)
chr3 (21-180)||(46111943-46112103)
chr3 (89-180)||(29472909-29473000)
chr3 (21-180)||(36370337-36370497)
chr3 (21-180)||(38231325-38231484)
chr3 (21-180)||(39072278-39072432)
chr3 (21-178)||(36749438-36749596)
chr3 (21-180)||(44000021-44000181)
chr3 (21-75)||(29460692-29460746)
chr3 (21-75)||(29471544-29471598)
chr3 (21-180)||(48200717-48200877)
[»] scaffold0062 (1 HSPs)
scaffold0062 (21-180)||(6750-6910)
[»] scaffold0043 (1 HSPs)
scaffold0043 (104-180)||(87162-87238)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 52191352 - 52191200
Alignment:
Q  28 tttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaaca 127  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  52191352 tttaacagccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagaggagatgatgatgtgatgcgaaattactaaaatactcctaaca 52191253  T
Q  128 catggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52191252 tatggggtgtacacgagaggtgtataaaaaagggtgtctttcaatctttttcc 52191200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 44275749 - 44275897
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacatg 131  Q
    |||| |||||| | |||||||| ||| |||||| ||||||||||  ||| | |  |  ||||||| ||||| |||||||||||||||| |||||||||||    
T  44275749 acactcacacacatttgtgacacgtgccaaaaatattgaaagaagagattaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatg 44275848  T
Q  132 gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||||  |||||||||| ||||||||||||| |||||||||||||    
T  44275849 gggtgtacataagaggtgtatgaaaaagggtgtctatctatctttttcc 44275897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 52191160 - 52191085
Alignment:
Q  220 ttccttcggcaatgaaaacgaatgcacaatccgctggcaaaagaaatcagaaactacatgcaaatggtgttctttcc 296  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52191160 ttccttcggcaaagaaaacgaatgcacaatccgctggcaaa-gaaatcagaaactacatgcaaatggtgttctttcc 52191085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 49243847 - 49244006
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||||||| | |||||||||||| |||||||||||||||||  ||||| |   | ||||||| ||||| ||||||||||||||||     
T  49243847 tacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaaaagtgatgatatgatgtaaaattactaaaatacc 49243946  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||||| |||||||  |||||||||| ||||||| |||||   |||||||||||    
T  49243947 cctaatacatggagtgtacataagaggtgtatgaaaaaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 46192391 - 46192551
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| | ||  |||| ||||||||  |||| | ||||||||     
T  46192391 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgataatgtgatgtgaaatgattaaaatacc 46192490  T
Q  121 cctaacacatggggtgtacacgagaggtgtat-aaaaaagggtgtctttctatctttttcc 180  Q
    |||   ||||||||||||||  |||||||||| ||||||||||||||  ||||||||||||    
T  46192491 cctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 46192551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 21391114 - 21390955
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||| ||||||||||  ||| | |  || |||  || ||||| ||||||||||||||||     
T  21391114 tacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaatgagtgaatatatgatgtaaaattactaaaatacc 21391015  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||| ||||||||  | |||||||| |||||||||||||  ||||||||||||    
T  21391014 cctaacacatgaggtgtacataaaaggtgtatgaaaaagggtgtctacctatctttttcc 21390955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 6112662 - 6112821
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  | |||||||| ||||| ||||||||| ||||||     
T  6112662 tacaccattttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgatgatatgatgtaaaattactcaaatacc 6112761  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||||| |||||||  ||| |||||| |||||| ||||||  ||||||||||||    
T  6112762 cctaatacatggagtgtacataagaagtgtatgaaaaagagtgtctacctatctttttcc 6112821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 7217797 - 7217957
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||||||||| ||||| | |||||||| ||| |||||||||| ||| ||  ||||| |  |  ||||||| ||||| ||||||||||||||||     
T  7217797 tacaccctttaacacctacacacatttgtgacacgtggcaaaaacattaaaataagagataaaaaagggtgatgatatgatgtaaaattactaaaatacc 7217896  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
      ||||||||| |||||||||  |||||||||| ||||||||||| |  ||||||||||||    
T  7217897 tataacacatgagggtgtacataagaggtgtatgaaaaagggtgtttacctatctttttcc 7217957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 45829416 - 45829257
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| | ||  |||| ||||||||  |||| | ||||||||     
T  45829416 tacacctttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgataatgtgatgtgaaatgattaaaatacc 45829317  T
Q  121 cctaacacatggggtgtacacgagaggtgtat-aaaaaagggtgtctttctatctttttcc 180  Q
    |||  || ||||||||||||  | |||||||| ||||||||||||||  ||||||||||||    
T  45829316 cctggcatatggggtgtaca-taaaggtgtatcaaaaaagggtgtctacctatctttttcc 45829257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 51038801 - 51038956
Alignment:
Q  27 ctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagagggaatgatgatgtgatgcaaaattactaaaatactcctaa 125  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||  ||| || ||||  ||||| |||||||  ||||||||||||||   ||      
T  51038801 ctttgacacccacacacaattgtgacatgtgacaaaaacattgaaagaagagatgaaaagggggtgatggtgtgatgtgaaattactaaaatatctctgc 51038900  T
Q  126 cacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||||||||| |||| ||  || ||||| |||||||  ||||||||||||    
T  51038901 cacataggggtgtacatgagatgtacatgaaaaaaggtgtctgcctatctttttcc 51038956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 35544944 - 35545102
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaa-tac 119  Q
    |||||| ||| ||| ||||| | | |||||| | ||| |||||||||||||||||   |||| | ||  ||||||| ||||| ||||||||||||| |||    
T  35544944 tacaccattttacatccacatacatttgtgatacgtggcaaaaacattgaaagaagatataaaaaggggtgatgatatgatgtaaaattactaaaaatac 35545043  T
Q  120 tcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatcttttt 178  Q
     |||||||||||| |||||||  || ||||||| |||||||||||||  ||||||||||    
T  35545044 ccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 3672306 - 3672466
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| | ||||||| ||||||     
T  3672306 tacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtataattactcaaatacc 3672405  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||| |||||||||  ||| |||||| ||||||||| |||  ||||||||||||    
T  3672406 cctaatacatgagggtgtacataagaagtgtatgaaaaagggtatctacctatctttttcc 3672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 28093255 - 28093095
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| ||||||||||||||| |  ||| | |  |  ||||||| ||||| |||| |||| ||||||     
T  28093255 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaaggagagatgaaaaagggtgatgatatgatgtaaaaatactcaaatacc 28093156  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||| ||||||||||  ||| |||||| ||||||| |||||  ||||||||||||    
T  28093155 cctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtctacctatctttttcc 28093095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 54849818 - 54849918
Alignment:
Q  19 cgtacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaata 118  Q
    ||||||| |||| | ||||||||  | |||||||| |||||||||| ||||||||||  ||| |||| | ||||||||||||||  |||||| |||||||    
T  54849818 cgtacacactttgatacccacacgcagttgtgacaagtgacaaaaatattgaaagaagagatgagagaggatgatgatgtgatgtgaaattattaaaata 54849917  T
Q  119 c 119  Q
    |    
T  54849918 c 54849918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 36157936 - 36158012
Alignment:
Q  90 tgatgatgtgatgcaaaattactaaaatactcctaacacatggg-gtgtacacgagaggtgtataaaaaagggtgtc 165  Q
    ||||| |||||||  ||||||||||||||| | || ||||| || ||||||| |||||||  |||||||||||||||    
T  36157936 tgatggtgtgatgtgaaattactaaaatacccttaccacataggagtgtacatgagaggtacataaaaaagggtgtc 36158012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 14022966 - 14023124
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||| | | ||  ||| |||||||||  |||||||||||||||     
T  14022966 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgacaaggggtgacgatgtgatgtgaaattactaaaatacc 14023065  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttc 179  Q
    ||||||||||| |||||||| | |||||||||||||||||||||||  |||||||||||    
T  14023066 cctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttc 14023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 24208487 - 24208635
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacatg 131  Q
    ||||||||||| | |||||| ||||| |||||||||||||||||  ||| | |  |  ||| |||||||||  ||||||||||||||| |||||||||||    
T  24208487 acacccacacacatttgtgatatgtggcaaaaacattgaaagaagagatgaaaaagggtgaggatgtgatgtgaaattactaaaatacccctaacacatg 24208586  T
Q  132 gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||||| | ||||||||||||||||||| |||||  ||||||||||||    
T  24208587 aggtgtaaatgagaggtgtataaaaaaggatgtctacctatctttttcc 24208635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 3118206 - 3118046
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| |||| |||||| | |||||||| ||| |||||||||||||||||  ||||| |  |  || |||  ||||| ||||||||||||||||     
T  3118206 tacacccttttacactcacacacatttgtgacacgtggcaaaaacattgaaagaatagataaaaaagggtggtgacatgatgtaaaattactaaaatacc 3118107  T
Q  121 cctaacacatggg-gtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||||| |||||||  |||| ||||| ||||||| |||||  ||||||||||||    
T  3118106 cctaatacatgggagtgtacataagagatgtatgaaaaaggatgtctacctatctttttcc 3118046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 3987064 - 3986945
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | | || ||||| || ||||| ||||||||| ||||||     
T  3987064 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagggatgataatatgatgtaaaattactcaaatacc 3986965  T
Q  121 cctaacacatggggtgtaca 140  Q
    | ||| ||||||||| ||||    
T  3986964 cttaatacatggggtataca 3986945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 13108180 - 13108338
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| ||||||| |||||||||  ||| | ||||  ||| |||||||||  |||||||||||||||     
T  13108180 tacacccttttacacccacacacatttgtgacatgtggcaaaaacgttgaaagaagagatgaaagggg-tgaggatgtgatgtgaaattactaaaatacc 13108278  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||  ||||||||||||    
T  13108279 cctaacacatgaggtgtacatgaaaggtgtataaaaaagggtgtctacctatctttttcc 13108338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 5811310 - 5811163
Alignment:
Q  33 cacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacatgg 132  Q
    |||||||||| | |||||||||||| |||||||||||||||||  ||| | | ||  ||| |||||||||  ||||||||||||||| |||||||||||     
T  5811310 cacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacccctaacacatga 5811211  T
Q  133 ggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||| | |||||||||||||||||||||||  ||||||||||||    
T  5811210 ggtgtacatgggaggtgtataaaaaagggtgtctacctatctttttcc 5811163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 36346723 - 36346564
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagagggaatgatgatgtgatgcaaaattactaaaatac 119  Q
    |||||||||| ||||||| ||| | |||||||| ||| |||||||||||||||||  ||| || | ||  ||||||| ||||| ||||||||||||||||    
T  36346723 tacacccttttacacccagacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagg--tgatgatatgatgtaaaattactaaaatac 36346626  T
Q  120 tcctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     ||||||||||| |||||||||  |||||||||| |||||||||||||  ||||||||||||    
T  36346625 ccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 36346564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 45782808 - 45782659
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacatg 131  Q
    ||||||||||| | |||||||| |||||||||||||||||||||  ||| | |  |  ||||||| ||||| |||||||||||||||| |||||||||||    
T  45782808 acacccacacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatg 45782709  T
Q  132 gg-gtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    || |||||||  | | ||||||||||||||||||||  ||||||||||||    
T  45782708 ggagtgtacataaaaagtgtataaaaaagggtgtctacctatctttttcc 45782659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 46475067 - 46475216
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcc-taacacat 130  Q
    ||||||| ||| | ||||||||||| ||||||||||||||||||  ||| | | ||  ||| |||||||||  ||||||||||||||| || ||||||||    
T  46475067 acacccatacacatttgtgacatgtaacaaaaacattgaaagaagagatgaaaaggggtgacgatgtgatgtgaaattactaaaataccccataacacat 46475166  T
Q  131 ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | | |||||| |||||||||||||||||||||||||  ||||||||||||    
T  46475167 gagatgtacatgagaggtgtataaaaaagggtgtctacctatctttttcc 46475216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 7700042 - 7699882
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  | |||||||| ||||  ||||||||||||||||     
T  7700042 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatgatatgatataaaattactaaaatacc 7699943  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | |||||||||  |||||| |  |||||||||| ||||||||||| |  ||||||||||||    
T  7699942 cataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 7700240 - 7700080
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  | |||||||| ||||  ||||||||||||||||     
T  7700240 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatgatatgatataaaattactaaaatacc 7700141  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | |||||||||  |||||| |  |||||||||| ||||||||||| |  ||||||||||||    
T  7700140 cataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 7700438 - 7700278
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  | |||||||| ||||  ||||||||||||||||     
T  7700438 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatgatatgatataaaattactaaaatacc 7700339  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | |||||||||  |||||| |  |||||||||| ||||||||||| |  ||||||||||||    
T  7700338 cataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 7700636 - 7700476
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  | |||||||| ||||  ||||||||||||||||     
T  7700636 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaaggatgatgatatgatataaaattactaaaatacc 7700537  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | |||||||||  |||||| |  |||||||||| ||||||||||| |  ||||||||||||    
T  7700536 cataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatctttttcc 7700476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 34828097 - 34828256
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||| ||||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | | |  |||||||| ||||| ||||||||||||||||     
T  34828097 tacatccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtgatgatgatatgatgtaaaattactaaaatacc 34828196  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||| ||||||||| ||  || ||||||| ||||||| |||||  ||||||||||||    
T  34828197 cctaacatatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcc 34828256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 21807481 - 21807324
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||||| | |||||| ||||| |||||| ||||||||||  ||| | |  | |||||||||| |||  |||||||||||||||     
T  21807481 tacaccattttacacccacacaaatttgtgatatgtggcaaaaatattgaaagaagagatgaaaatggatgatgatgttatgtgaaattactaaaatacc 21807382  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatcttttt 178  Q
    |||||||| ||||||||| | |||| |||||||||||||| ||||   ||||||||||    
T  21807381 cctaacacgtggggtgtatatgagaagtgtataaaaaaggttgtcaacctatcttttt 21807324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 34108458 - 34108618
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | ||||||||| |||||||||||||||| |||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  34108458 tacacccttttacacccacacatatttgtgacatatgacaaaaacattgaatgaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 34108557  T
Q  121 cctaacacatggg-gtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||||| |||||||  ||| |||||| ||||||||||| |  ||||||||||||    
T  34108558 cctaatacatgggagtgtacataagaagtgtatgaaaaagggtgtttacctatctttttcc 34108618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 23980163 - 23980322
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||| | | ||  ||| |||||||||  |||||||||||||||     
T  23980163 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacc 23980262  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||||| ||| | |||||| |  |  ||||||||||||| |||||  ||||||||||||    
T  23980263 tctaacatatgagatgtacatggaaaatgtataaaaaaggatgtctacctatctttttcc 23980322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 31148322 - 31148481
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | ||||||||  || |||||||||||||||||  ||| | |  |  ||||||| ||||| |||||||||||||||      
T  31148322 tacacccttttacacccacacacatttgtgacacatggcaaaaacattgaaagaagagatgaaaatgggtgatgatatgatgtaaaattactaaaataag 31148421  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||| |||||||||  |  |||||||||| |||||| ||||||  ||||||||||||    
T  31148422 cctaacatatggggtgtgtataagaggtgtatgaaaaagagtgtctacctatctttttcc 31148481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 26972362 - 26972202
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | || ||||| ||| ||||||||||||||| |  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  26972362 tacacccttttacacccacacacatttatgacacgtggcaaaaacattgaaaggagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 26972263  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||||||| ||||||  ||| |||||| |||||||||||||  ||||||||||||    
T  26972262 cctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 26972202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 28307654 - 28307494
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | ||| |||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||||||||||     
T  28307654 tacacccttttacacccacacacatttgcgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactaaaatacc 28307555  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | ||||| || ||||||||||  |||||||||| ||||| | |||||  ||||||||||||    
T  28307554 cttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtctacctatctttttcc 28307494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 42221111 - 42220963
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattact-aaaatactcctaacacat 130  Q
    ||||||||||| | |||||||| ||| |||||||||||||||||   |||| | ||  ||||||| |||||  |||||||| ||||||| ||||||||||    
T  42221111 acacccacacacatttgtgacacgtggcaaaaacattgaaagaagatataaaaaggggtgatgatatgatgttaaattactaaaaatacccctaacacat 42221012  T
Q  131 ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    || |||||||  || ||||||| ||||| |||||||  ||||||||||||    
T  42221011 ggagtgtacataagtggtgtatgaaaaa-ggtgtctacctatctttttcc 42220963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 36957461 - 36957619
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||| ||| | |||||||| |||||||||| |||| |||||  ||| | |  | ||||| |||| ||| ||||||||||||||||     
T  36957461 tacacccttttacatccatacatatttgtgacacgtgacaaaaatattgtaagaagagatgaaaatggatgataatgtaatgtaaaattactaaaatacc 36957560  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    || ||||||| ||||||| | || ||||||||||||||  ||||||  ||||||||||||    
T  36957561 cccaacacat-gggtgtatatgaaaggtgtataaaaaattgtgtctacctatctttttcc 36957619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 42950111 - 42950036
Alignment:
Q  105 aaattactaaaatactcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||||||| ||| | |||||||||||||| |  ||||||||||||||||||||||  ||||||||||||    
T  42950111 aaattactaaaatacccctgaaacatggggtgtacatgctaggtgtataaaaaagggtgtctacctatctttttcc 42950036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 38321048 - 38321199
Alignment:
Q  28 tttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaaca 127  Q
    ||||||||||||| | |||||||||||||| |||||||||||||||||   || |||||   ||||| |||||||  ||| ||||||||||  |||  ||    
T  38321048 tttaacacccacatacaattgtgacatgtggcaaaaacattgaaagaagatatgagaggaggtgatggtgtgatgtgaaagtactaaaatatccctgcca 38321147  T
Q  128 catggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||| | || |||||||   ||| ||| |||||||  ||||||||||||    
T  38321148 catggggtat-catgagaggtacttaagaaatggtgtctacctatctttttcc 38321199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 30887732 - 30887878
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    ||||| |||| ||||||||| | | |||||||| ||  ||||||||||||| |||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  30887732 tacacacttttacacccacatacatttgtgacacgtagcaaaaacattgaatgaagagatgaaaaagggtgatgatatgatgtaaaattacttaaatacc 30887831  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctt 167  Q
     |||| |||||||||||| |  ||| |||||| ||||||||||||||    
T  30887832 tctaatacatggggtgtatataagaagtgtatgaaaaagggtgtctt 30887878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 20086784 - 20086690
Alignment:
Q  24 accctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaata 118  Q
    ||||||| ||||||||| | | ||| ||||| || |||||||||| ||||||  ||||| | ||  |||||||||||||  ||||||||||||||    
T  20086784 acccttttacacccacatacatttgagacatctggcaaaaacattaaaagaagagataaaaaggggtgatgatgtgatgtgaaattactaaaata 20086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 31800595 - 31800749
Alignment:
Q  26 cctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaa 125  Q
    ||||| ||||||||||| | || ||||| ||| |||||| ||||||||||| ||| | | ||  ||||||| ||||| |||||||||||||||| |||||    
T  31800595 ccttttacacccacacacatttatgacacgtggcaaaaatattgaaagaaaagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaa 31800694  T
Q  126 cacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    || ||||||||||||| |||||||||| |||||||||||||  ||||||||||||    
T  31800695 catatggggtgtacacaagaggtgtatgaaaaagggtgtctgcctatctttttcc 31800749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 13347160 - 13347320
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  || ||||||| ||||| | ||||||| ||||||     
T  13347160 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaatagatgaaaaagagtgatgatatgatgtataattactcaaatacc 13347259  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||| |||||||||  ||| |||||| |||||||||||||  ||||||||||||    
T  13347260 cctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 39370959 - 39371119
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  39370959 tacacccttttacacccacacacatttgtgacacgtgccaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 39371058  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||||||| ||||||  ||| |||||| |||||||||||||  ||||||||||||    
T  39371059 cctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 39371119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 27553521 - 27553376
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaa-aggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacat 130  Q
    ||||||||||| | |||||||| ||| ||||||||||||||||| || | || |  |  |||| || ||||| |||||||||||||||||||||||||||    
T  27553521 acacccacacacatttgtgacacgtggcaaaaacattgaaagaagagaagaaaaatgg-tgattatctgatgtaaaattactaaaatactcctaacacat 27553423  T
Q  131 ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttt 177  Q
     |||||||||  |||||||||| ||||||||||||| ||||| ||||    
T  27553422 agggtgtacataagaggtgtatgaaaaagggtgtctatctatttttt 27553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 2237308 - 2237468
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  2237308 tacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 2237407  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| || ||||| ||||||  ||| |||||| |||||||||||||  ||||||||||||    
T  2237408 cctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtctacctatctttttcc 2237468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 1815775 - 1815656
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||||||| | |||||||| ||| |||||||||||||||||  ||| | | ||  ||||||| ||||| ||||||||||||||||     
T  1815775 tacacccttttacatccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtgatgatatgatgtaaaattactaaaatacc 1815676  T
Q  121 cctaacacatggggtgtaca 140  Q
    |||||||||| |||||||||    
T  1815675 cctaacacatagggtgtaca 1815656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 4300697 - 4300544
Alignment:
Q  26 cctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaa 125  Q
    ||||| ||||||||||| | ||||||||| || |||||||||||||| ||  ||||| |     || ||||||||||  |||||| |||||||  |||||    
T  4300697 ccttttacacccacacatatttgtgacatatggcaaaaacattgaaataagagataaaaaatggtggtgatgtgatgtgaaattattaaaatatccctaa 4300598  T
Q  126 cacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttc 179  Q
    |||||| |||||||| ||||| ||||||||||||| ||||| || |||||||||    
T  4300597 cacatgaggtgtacatgagagatgtataaaaaaggatgtctatcaatctttttc 4300544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 40888101 - 40887941
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    ||||| |||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  || |||| ||||| ||||||||||||||||     
T  40888101 tacactcttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtggtgatatgatgtaaaattactaaaatacc 40888002  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||| | |||||| ||||||  |||||||||| |||||||||||||  ||||||||||||    
T  40888001 tctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 40887941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 41004008 - 41003850
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| |||| || ||| | || ||||||||| |||||| ||||||| | |  |||| | || |||||||||||||| ||||||||| |||||      
T  41004008 tacacccttttacactcatacacatttatgacatgtggcaaaaatattgaaaaagat-ataaaaagggatgatgatgtgatgtaaaattact-aaatatc 41003911  T
Q  121 cctaacacatggggtgtacacgagaggtgtataa-aaaagggtgtctttctatctttttcc 180  Q
    ||| ||| |||||||||||| ||||||||||||| |||| ||| ||| |||||||||||||    
T  41003910 cctgacatatggggtgtacatgagaggtgtataacaaaaaggtttctgtctatctttttcc 41003850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 17225355 - 17225461
Alignment:
Q  27 ctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaac 126  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||  ||| | | |   |||||||||||||  ||||||||||||||| ||| |     
T  17225355 cttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagaggtgatgatgtgatgtgaaattactaaaatacccctgat 17225454  T
Q  127 acatggg 133  Q
    |||||||    
T  17225455 acatggg 17225461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 42683670 - 42683791
Alignment:
Q  60 aaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacatgggg-tgtacacgagaggtgtataaaaaa 158  Q
    ||||||||||||||||  ||| | |  | ||| |||| ||||| |||||||||||||||| ||||| | |||||| ||||||  |||||||||| |||||    
T  42683670 aaaaacattgaaagaagagatgaaaaaggatggtgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaa 42683769  T
Q  159 gggtgtctttctatctttttcc 180  Q
    || ||||| |||||||||||||    
T  42683770 ggatgtctatctatctttttcc 42683791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 14831576 - 14831736
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||| | ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||| | ||||||     
T  14831576 tacacccttttacacccacacacatttgtgatacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattattcaaatacc 14831675  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| || | ||||||||||  ||| |||||| ||||||||||| |  ||||||||||||    
T  14831676 cctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgtttacctatctttttcc 14831736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 33404595 - 33404541
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 75  Q
    ||||| |||| ||||||||||| | |||||||| ||| |||||||||||||||||    
T  33404595 tacacacttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaa 33404541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 33726043 - 33726203
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat-aagagggaatgatgatgtgatgcaaaattactaaaatac 119  Q
    |||||| ||| ||||||||| | | |||||||||||| |||||||||||||||||  ||| || || | |||| |||||||||  |||||||||||||||    
T  33726043 tacacctttttacacccacaaacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaagtggatgacgatgtgatgtgaaattactaaaatac 33726142  T
Q  120 tcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||||||||||  ||||||| | |||||||||||||||||||||||  ||||||||||||    
T  33726143 ccctaacacatgaagtgtacatgggaggtgtataaaaaagggtgtctacctatctttttcc 33726203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 30432371 - 30432530
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| | ||||||||| | |||||||| ||| |||||||||||||||||  ||| | | ||  ||||||| ||||| ||||||||||||||||     
T  30432371 tacacccttttatacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaggggtgatgatatgatgtaaaattactaaaatacc 30432470  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | ||| | ||||| ||||||  |||||||||| ||||||||||||| || ||||||||||    
T  30432471 cataatatatgggatgtacataagaggtgtatgaaaaagggtgtctatcaatctttttcc 30432530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 38845165 - 38845023
Alignment:
Q  37 cacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacat-ggggt 135  Q
    |||||| ||||||||||||||  ||||| ||||||||||| ||||||||||  |||||||||||||  ||||||||||||||  ||||||||||  ||||    
T  38845165 cacacacaattgtgacatgtggaaaaaatattgaaagaaaagataagaggg-gtgatgatgtgatgagaaattactaaaataaccctaacacataagggt 38845067  T
Q  136 gtacacgagaggtgtataaaaaagggtgtctttctatctttttc 179  Q
    ||||| ||  ||||||||||||| ||||| | ||||||||||||    
T  38845066 gtacatgaagggtgtataaaaaatggtgtttatctatctttttc 38845023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 36189248 - 36189406
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||| | | |||||||| ||| |||||| ||||||||||  ||| | | ||| ||||||| ||||  ||||||| ||||||||     
T  36189248 tacacccttttacacccacatacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaggagtgatgatatgatataaaattattaaaatacc 36189347  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||| ||||| ||||||  || ||||||| |||||||||||||  ||||||||||||    
T  36189348 cctaacatatggg-tgtacataagtggtgtatgaaaaagggtgtctacctatctttttcc 36189406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 12665376 - 12665537
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataaga---gggaatgatgatgtgatgcaaaattactaaaat 117  Q
    |||||||||| |||| |||||| | |||| ||||||| |||||||||||||||||  ||||| |   |||  ||||||| ||||| ||||||||||||||    
T  12665376 tacacccttttacactcacacacatttgtaacatgtggcaaaaacattgaaagaagagataaaaaaaggg--tgatgatatgatgtaaaattactaaaat 12665473  T
Q  118 actcctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    || ||||||||||| |||| ||||  |||||||||  ||||||| |||||  ||||||||||||    
T  12665474 acccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtctacctatctttttcc 12665537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 42162630 - 42162790
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||| ||| | |||||||| |||||||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  42162630 tacacccttttacacccaaacacatttgtgacacgtgacaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 42162729  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||| ||||||||||  | | |||||| |||||| ||||||  ||||||||||||    
T  42162730 cctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtctacctatctttttcc 42162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 18184585 - 18184744
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||||||| | |||||||| |||   ||||||||||| |||  ||| | | ||  ||||||| ||||  ||||||||||||||||     
T  18184585 tacacccttttacatccacacatatttgtgacacgtggtgaaaacattgaatgaagagatgaaaaggggtgatgatatgatataaaattactaaaatacc 18184684  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||| ||||||||  | |||||||| ||||||| |||||  ||||||||||||    
T  18184685 cctaacacatgaggtgtacataaaaggtgtatgaaaaaggatgtctacctatctttttcc 18184744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 10203696 - 10203856
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||| ||||| ||| ||||||| | |||||||| |||||||||| ||||||||||  ||| | |  |  || |||| ||||  |||||||||||||||      
T  10203696 tacatccttttacatccacacacatttgtgacacgtgacaaaaatattgaaagaagagatgaaaaagggtggtgatatgatataaaattactaaaatatc 10203795  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||| |||||||||  |||| ||||| |||||||||||||  ||||||||||||    
T  10203796 cctaatacatgagggtgtacataagagatgtatgaaaaagggtgtctacctatctttttcc 10203856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 44081812 - 44081958
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||| ||| |||  ||||||||||||||||  ||| | |  |  ||||||| | ||| ||||||||| ||||||     
T  44081812 tacacccttttacacccacacacatttgtaacacgtggaaaaaacattgaaagaagagatgaaaaagggtgatgatataatgtaaaattactcaaatacc 44081911  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtct 166  Q
    ||||| |||||||| ||||||  ||| |||||| |||||||||||||    
T  44081912 cctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct 44081958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 31318852 - 31318997
Alignment:
Q  36 ccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacat-gggg 134  Q
    ||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| |||||||||||| |||| ||||    
T  31318852 ccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctaatacatggggg 31318951  T
Q  135 tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||| |  ||| |||||| ||||| | |||||  ||||||||||||    
T  31318952 tgtatataagaagtgtatgaaaaatgatgtctacctatctttttcc 31318997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 31606 - 31552
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 75  Q
    ||||| |||| ||||||||| | |||||||||||||| |||||||||||||||||    
T  31606 tacacactttgacacccacatacaattgtgacatgtggcaaaaacattgaaagaa 31552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 3690692 - 3690602
Alignment:
Q  90 tgatgatgtgatgcaaaattactaaaatactcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||||| ||| ||||||| |||||||  || |||||| |  | || | || |||||||||||||||| ||||| |||||||||||||    
T  3690692 tgatgatgtgttgcgaaattacaaaaatacctctgacacatagaatatatatgaaaggtgtataaaaaaggatgtctatctatctttttcc 3690602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 42668940 - 42668886
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 75  Q
    ||||| |||| ||||||||||| |||||||||| ||| |||||||||| ||||||    
T  42668940 tacacactttgacacccacacacaattgtgacacgtggcaaaaacattaaaagaa 42668886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 37499024 - 37498862
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat----aagagggaatgatgatgtgatgcaaaattactaaaa 116  Q
    |||| ||||| |||| |||||| | |||||||||||| |||||||||||||||||  |||    |||||||  ||||||| ||||| |||||||||||||    
T  37499024 tacatccttttacactcacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagaggg--tgatgatatgatgtaaaattactaaaa 37498927  T
Q  117 tactcctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||| |||||||||||||| ||||||  ||||||||||||||||||||||||  ||||||||||||    
T  37498926 tacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtctacctatctttttcc 37498862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 44958145 - 44958305
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| |  |  ||||||| ||||| ||||||||||||||||     
T  44958145 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaagggtgatgatatgatgtaaaattactaaaatacc 44958244  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||| |||| ||||  |||||||||| ||||||| |||||  ||||||||||||    
T  44958245 cctaacacatgagggtatacataagaggtgtatgaaaaaggatgtctacctatctttttcc 44958305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 16089854 - 16090012
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||||| |  |  || |||| ||||| ||||||||||||||||     
T  16089854 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagataaaaaagg-tggtgatatgatgtaaaattactaaaatacc 16089952  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||||||||||||  |||||||||| ||||| |||||||  ||||||||||||    
T  16089953 cctaacacatggggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcc 16090012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 33732601 - 33732760
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||| | |  |  || |||| ||||| ||||||||||||||||     
T  33732601 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtggtgatatgatgtaaaattactaaaatacc 33732700  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| | ||||||||||||  |||||||||| |||||||||||||  ||||||||||||    
T  33732701 cctaatatatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 33732760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 3831054 - 3830900
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| |||||||||||   |||||||| ||| |||||||||||||||||  ||| | | |   |||| || ||||| ||||||||||| ||||     
T  3831054 tacacccttttacacccacacat--ttgtgacacgtggcaaaaacattgaaagaagagatgaaaagtggtgattatctgatgtaaaattactaatatacc 3830957  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttt 177  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||  |||||||||    
T  3830956 cctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctacctatctttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 36315593 - 36315753
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  ||||| | |   |||| ||||||||  |||| | ||||||||     
T  36315593 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaagaggtgataatgtgatgtgaaatgattaaaatacc 36315692  T
Q  121 cctaacacatggggtgtacacgagaggtgtat-aaaaaagggtgtctttctatctttttcc 180  Q
    ||| ||||||| ||||||||  |||||||||| |||||||| |||||  ||||||||||||    
T  36315693 cctgacacatgaggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 36315753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 37914395 - 37914236
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||||||| | |||||||||||| |||||||||||||||||  ||||| | ||  |||| ||||||||  |||| | ||||||||     
T  37914395 tacacccttttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagataaaaaggggtgataatgtgatgtgaaatgattaaaatac- 37914297  T
Q  121 cctaacacatggggtgtacacgagaggtgtat-aaaaaagggtgtctttctatctttttcc 180  Q
    |||   ||||||||||||||  |||||||||| ||||||||||||||  ||||||||||||    
T  37914296 cctggtacatggggtgtacataagaggtgtatcaaaaaagggtgtctacctatctttttcc 37914236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 41188869 - 41188961
Alignment:
Q  89 atgatgatgtgatgcaaaattactaaaatactcctaacacatggggtgtacacgagaggtgtataa-aaaagggtgtctttctatctttttcc 180  Q
    |||||||||||||| |||||||||||||||   || ||||||| | |||||| ||||||||||||| ||||||||||||  ||||||||||||    
T  41188869 atgatgatgtgatgtaaaattactaaaatatctctgacacatgtgatgtacatgagaggtgtataacaaaagggtgtctgcctatctttttcc 41188961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 6376392 - 6376238
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |     |||||||||||  ||| | |  |  ||| |||||||||  |||||||||||||||     
T  6376392 tacacccttttacacccacacacatttgtgacatgtggc-----cattgaaagaagagatgaaaatgggtgaggatgtgatgtgaaattactaaaatacc 6376298  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||||||||| | |||||| | ||||||||||||||||| |||||  ||||||||||||    
T  6376297 tctaacacatgagatgtacatgggaggtgtataaaaaaggatgtctacctatctttttcc 6376238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 14573029 - 14573159
Alignment:
Q  23 caccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggat--aagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||| ||| ||||||| | |||||||| ||  |||||||||||||||||  |||  || ||||  ||||||| ||||| ||||||||||||||||     
T  14573029 cacccttttacatccacacacatttgtgacacgtagcaaaaacattgaaagaagagatggaaaaggg--tgatgatatgatgtaaaattactaaaatacc 14573126  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtat 152  Q
    |||||||||| ||||||||||  ||||||||||    
T  14573127 cctaacacatgggggtgtacataagaggtgtat 14573159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 24137238 - 24137153
Alignment:
Q  34 acccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatac 119  Q
    ||||||||| | ||||||||||||||||||||||||||||||  ||| | | || |||| |||||||||  |||||||||||||||    
T  24137238 acccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaagggatgaggatgtgatgtgaaattactaaaatac 24137153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 13535751 - 13535834
Alignment:
Q  96 tgtgatgcaaaattactaaaatactcctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatcttttt 178  Q
    |||||||  ||||||||||||||| |||  ||||||||| | |||| |||||||  |||||||||| ||||| |||||||||||    
T  13535751 tgtgatgtgaaattactaaaatacccctgtcacatgggggtatacatgagaggtacataaaaaaggatgtctatctatcttttt 13535834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 19258831 - 19258674
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||| | | |||||||||||| |||||||||||||| ||  ||| | | ||  || ||||||||||  |||||| ||||||| |    
T  19258831 tacacctttttacacccacatatatttgtgacatgtggcaaaaacattgaaaaaagagatgaaaaggggtggtgatgtgatgtgaaattattaaaatatt 19258732  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatcttttt 178  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||    
T  19258731 cctaacacatggggtgtacatgagagatgtataaaaaagggtgtctacctatcttttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 28647396 - 28647544
Alignment:
Q  32 acacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatactcctaacacatg 131  Q
    ||||||||||| | |||||| || || |||||||||||||||||  ||| | | ||  || ||||||||||  |||||| ||||||| ||||||||||||    
T  28647396 acacccacacatatttgtgatatttggcaaaaacattgaaagaatagatgaaaaggggtggtgatgtgatgtgaaattattaaaatattcctaacacatg 28647495  T
Q  132 gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    || |||||| ||||| |||||||||||||||||||  ||||||||||||    
T  28647496 ggatgtacatgagagatgtataaaaaagggtgtctacctatctttttcc 28647544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 34307297 - 34307137
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||| ||||||| | |||||||| ||| |||||||||||||||||   || | |  |  ||||||| ||||| ||||||||||||||||     
T  34307297 tacacccttttacatccacacacatttgtgacacgtggcaaaaacattgaaagaagatatgaaaaagggtgatgatatgatgtaaaattactaaaatacc 34307198  T
Q  121 cctaacacatggg-gtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||||||||||| |||||||  |||||||||| ||||| |||||||  ||||||||||||    
T  34307197 cctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcc 34307137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 39250022 - 39249864
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||| ||| | |||||||| ||| |||||||||||||||||  ||| | |  | ||| |||| | ||| ||||||||||||||||     
T  39250022 tacacccttttacacccatacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatggtgatataatgtaaaattactaaaatacc 39249923  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatcttttt 178  Q
    ||||| |||| ||||||||||  |||||||||| ||||| |||||||  ||||||||||    
T  39249922 cctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtctacctatcttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 2509056 - 2509216
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||| ||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  || |||| ||||| |||||||||||||||      
T  2509056 tacatccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtggtgatatgatgtaaaattactaaaatatc 2509155  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||| |||||||||  |||||||||| |||||  ||||||  ||||||||||||    
T  2509156 cctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtctacctatctttttcc 2509216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 46901894 - 46901734
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||| ||||| | |||||||| ||| |||||||||| ||||||  ||| | |  |  ||||||| ||||| ||||||||| |||||||    
T  46901894 tacaccattttacaccaacacatatttgtgacacgtggcaaaaacattaaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatact 46901795  T
Q  121 cctaacacatgg-ggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||| | |||||| ||||||||  |||  ||||| ||||||| |||||  ||||||||||||    
T  46901794 cctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtctacctatctttttcc 46901734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 9643018 - 9642929
Alignment:
Q  28 tttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataag-agggaatgatgatgtgatgcaaaattactaaaa 116  Q
    ||||||||||||||| ||||||||||  ||||||||||| ||||||||  ||| || ||||  ||||||| |||||  ||||||||||||    
T  9643018 tttaacacccacacataattgtgacacatgacaaaaacaatgaaagaagagatgagaagggggtgatgatatgatgtgaaattactaaaa 9642929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 10146998 - 10147049
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaa 72  Q
    |||||||||| || |||||||| |||||||||||||| |||||||| |||||    
T  10146998 tacaccctttgacccccacacacaattgtgacatgtggcaaaaacagtgaaa 10147049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 8848989 - 8848961
Alignment:
Q  44 aattgtgacatgtgacaaaaacattgaaa 72  Q
    |||||||||||||||||||||||||||||    
T  8848989 aattgtgacatgtgacaaaaacattgaaa 8848961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 29099863 - 29099899
Alignment:
Q  36 ccacacagaattgtgacatgtgacaaaaacattgaaa 72  Q
    ||||||| | |||||||||||||||||||||||||||    
T  29099863 ccacacacatttgtgacatgtgacaaaaacattgaaa 29099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 21559593 - 21559753
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||| ||||||||||  ||| | |  |  | ||||| ||||| ||||||||||||||||     
T  21559593 tacacccttttacacccacacacatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaagggtaatgatatgatgtaaaattactaaaatacc 21559692  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||||| ||||||||||  |||||||||| ||||| ||||||| |||||||||||||    
T  21559693 cctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtctatctatctttttcc 21559753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 39467260 - 39467101
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||||||| |||||| ||||||||||  ||| | | ||  ||| ||||||||   ||||||||||||||      
T  39467260 tacacccttttacacccacacatatttgtgacatgtgccaaaaatattgaaagaagagatgaaaaggggtgaggatgtgatatgaaattactaaaatatc 39467161  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | ||||||||| |||||||| | ||||||||||||||||||||| |  ||||||||||||    
T  39467160 cataacacatgaggtgtacatgggaggtgtataaaaaagggtgtgtacctatctttttcc 39467101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 20856310 - 20856153
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||| ||| | |||||||||||| |||||||||||||| | |  |||| | ||| ||||||||||||  |||||||||||| |||     
T  20856310 tacacccttttacacccatacacatttgtgacatgtggcaaaaacattgaaaaagat-ataaaaagga-tgatgatgtgatataaaattactaaa-tacc 20856214  T
Q  121 cctaacacatggggtgtacacgagaggtgtataa-aaaagggtgtctttctatctttttcc 180  Q
    ||| |||||||||||||||| ||||||||||||| |||| | ||| | |||||||||||||    
T  20856213 cctgacacatggggtgtacatgagaggtgtataacaaaaagatgtttgtctatctttttcc 20856153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 30735654 - 30735495
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaa-tac 119  Q
    |||||||||| ||||||||||| |  ||||||| ||| |||||||||||||||||   |||| | ||  ||||||| |||||  |||||||||||| |||    
T  30735654 tacacccttttacacccacacacatctgtgacacgtggcaaaaacattgaaagaagatataaaaaggg-tgatgatatgatgttaaattactaaaaatac 30735556  T
Q  120 tcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||||||||||| |||||||  || ||||||| |||||||||||||  ||||||||||||    
T  30735555 ccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatctttttcc 30735495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 34750057 - 34749897
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  34750057 tacacccttttacacccacacatatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 34749958  T
Q  121 cctaacacat-ggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||| ||||||||||  ||| |||||| ||||||| |||||  ||||||||||||    
T  34749957 cctaatacataggggtgtacataagaagtgtatgaaaaaggatgtctggctatctttttcc 34749897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 51339940 - 51339783
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||| ||||| |||||||||||   |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||||||||||     
T  51339940 tacatccttttacacccacacat--ttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactaaaatacc 51339843  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     ||||||||||  |||||||  |||||||||| |||||||||||||  ||||||||||||    
T  51339842 tctaacacatgatgtgtacataagaggtgtatgaaaaagggtgtctacctatctttttcc 51339783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 179
Target Start/End: Original strand, 22894712 - 22894870
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  | |||||||| ||||| | ||||||| ||||||     
T  22894712 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaaggatgatgatatgatgtataattactcaaatacc 22894811  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttc 179  Q
    ||||| ||||| |||||||||  ||| ||||||  |||||||||||| ||||||||||||    
T  22894812 cctaatacatgagggtgtacataagaagtgtat-gaaaagggtgtctatctatctttttc 22894870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 53638167 - 53638278
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||||||||||||||| ||| ||||||||||  |||||||| |||||||  ||| ||||||  ||||||||||||| |||||| |||||||||     
T  53638167 tacaccctttaacacccacacacaatcgtgacatgtggtaaaaacatggaaagaagagatgagagggggtgatgatgtgatgtaaaattgctaaaatacc 53638266  T
Q  121 cctaacacatgg 132  Q
    ||| ||| ||||    
T  53638267 cctgacatatgg 53638278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 46112103 - 46111943
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||| ||||||| | |||||||||||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||||||||||     
T  46112103 tacaccattttacatccacacacatttgtgacatgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactaaaatacc 46112004  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| |||||||| |||| |  | |||||||| ||||| |||||||  ||||||||||||    
T  46112003 cctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtctacctatctttttcc 46111943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 29472909 - 29473000
Alignment:
Q  89 atgatgatgtgatgcaaaattactaaaatactcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||| ||  || ||||||| ||||||| |||||  ||||||||||||    
T  29472909 atgatgatatgatgtaaaattactaaaatacccctaacacatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcc 29473000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 36370497 - 36370337
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  36370497 tacacctttttacacccacacacatttgtgacatgtgacaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 36370398  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||| ||||||| |  | | |||||| |||||| || |||  ||||||||||||    
T  36370397 cctaatacatgagggtgtatataaaaagtgtatgaaaaagagtatctacctatctttttcc 36370337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 38231325 - 38231484
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatg---atgatgtgatgcaaaattactaaaat 117  Q
    |||||||||| ||||||||||| | |||||||||||| |||||||||||||||||  |||| ||   ||||   || |||| |||  |||| |||||| |    
T  38231325 tacacccttttacacccacacacatttgtgacatgtggcaaaaacattgaaagaa--gatatga--aaatggtaataatgtaatgtgaaatgactaaact 38231420  T
Q  118 actcctaacacatggggtgtacacgagaggtgtat-aaaaaagggtgtctttctatctttttcc 180  Q
    || ||| ||||||||||||||||  |||||||||| |||||||| |||||  ||||||||||||    
T  38231421 acccctgacacatggggtgtacataagaggtgtatcaaaaaaggatgtctacctatctttttcc 38231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 39072432 - 39072278
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||| | | |||||||||||| || ||||||| ||||||  ||| | |  |  |||||||||||||     ||||||||||||     
T  39072432 tacacccttttacacccacatacatttgtgacatgtggcataaacattaaaagaagagatgaaaatgggtgatgatgtgatg-----ttactaaaatacc 39072338  T
Q  121 cctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | | ||||||||||||||||  | || |||||||||||| ||||||  ||||||||||||    
T  39072337 cttgacacatggggtgtacatcaaagatgtataaaaaagtgtgtctacctatctttttcc 39072278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 36749438 - 36749596
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  36749438 tacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 36749537  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatcttttt 178  Q
     |||| ||||| |||||||||  | | |||||| |||||| ||||||  ||||||||||    
T  36749538 tctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtctacctatcttttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 44000021 - 44000181
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| ||||||     
T  44000021 tacacctttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacc 44000120  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
     |||| ||||| ||| |||||  | | |||||| |||||| ||||||  ||||||||||||    
T  44000121 tctaatacatgagggcgtacataaaaagtgtatgaaaaagagtgtctacctatctttttcc 44000181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 29460692 - 29460746
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 75  Q
    |||||||||| |||||||||||   |||||||||||| |||||||||||||||||    
T  29460692 tacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaa 29460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 29471544 - 29471598
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaa 75  Q
    |||||||||| |||||||||||   |||||||||||| |||||||||||||||||    
T  29471544 tacacccttttacacccacacacttttgtgacatgtggcaaaaacattgaaagaa 29471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 48200717 - 48200877
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||| ||| ||| ||||| | | |||||||| ||| |||||| ||||||||||  ||| | |  | |||||||| ||||| ||||||||| ||||||     
T  48200717 tacacctttttacatccacatatatttgtgacacgtggcaaaaatattgaaagaagagatgaaaaaggatgatgatatgatgtaaaattactcaaatacc 48200816  T
Q  121 cctaacacatgggg-tgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    | ||| |||||||| ||||||  | | |||||| ||||||| |||||  ||||||||||||    
T  48200817 cataatacatgggggtgtacataaaaagtgtatgaaaaaggatgtctacctatctttttcc 48200877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 6750 - 6910
Alignment:
Q  21 tacaccctttaacacccacacagaattgtgacatgtgacaaaaacattgaaagaaaggataagagggaatgatgatgtgatgcaaaattactaaaatact 120  Q
    |||||||||| ||||||||||| | |||||||| ||| |||||||||||||||||  ||| | |  |  ||||||| ||||| ||||||||| |||||      
T  6750 tacacccttttacacccacacacatttgtgacacgtggcaaaaacattgaaagaagagatgaaaaagggtgatgatatgatgtaaaattacttaaatatc 6849  T
Q  121 cctaacacatg-gggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    ||||| ||||| |||||||||  ||| |||||| ||||| ||| |||  ||||||||||||    
T  6850 cctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatctacctatctttttcc 6910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 87238 - 87162
Alignment:
Q  104 aaaattactaaaatactcctaacacatggggtgtacacgagaggtgtataaaaaagggtgtctttctatctttttcc 180  Q
    |||||||||||||||| ||||||||||||||||||||  | |||||||| ||||| |||||||  ||||||||||||    
T  87238 aaaattactaaaatacccctaacacatggggtgtacataaaaggtgtatgaaaaaaggtgtctacctatctttttcc 87162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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