View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8653_high_1 (Length: 336)
Name: NF8653_high_1
Description: NF8653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8653_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 43677247 - 43676930
Alignment:
| Q |
1 |
ttcaatctagcactcagagaatgtcctacagcacttgaaaacgctgacctatggcgccacagtaatcttcagccaattgtggttgatgttgttttggttc |
100 |
Q |
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| T |
43677247 |
ttcaatctagcactcagagaatgtcctacagcgcttgaaaacactgacctatggcgccacagtaatcttcagccaattgtggttgatgttgttttggttc |
43677148 |
T |
|
| Q |
101 |
atagaaaccttagtttctctccgaaggttcgatcttttgtaaaagagagaaacccctttgaagaattcggaggtgggtctgaacagaatgagaagattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43677147 |
atagaaaccttagtttctctccgaaggttcgatcttttgtaaaagagagaaacccctttgaagaattcggaggtgggtctgaacagaatgagaagattgt |
43677048 |
T |
|
| Q |
201 |
tgaaagatgggttattcaatatgaaagcaagaaaattaaggattgttctagttccaacactgcaaacactacaagaaggtcaagtaatacttttttgcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43677047 |
tgaaagatgggttattcaatatgaaagcaagaaaattaaggattgttctagttccaacactgcaaacactacaagaaggtcaagtaatacttttttgcag |
43676948 |
T |
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| Q |
301 |
aatttgtataagaaatct |
318 |
Q |
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|||||||||||||||||| |
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| T |
43676947 |
aatttgtataagaaatct |
43676930 |
T |
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