View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8653_low_1 (Length: 544)
Name: NF8653_low_1
Description: NF8653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8653_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Original strand, 49302421 - 49302936
Alignment:
| Q |
17 |
gtggatgtttcagatattcctaggttgaaagagattcttagtgctattccagagagtaagtataagaagctcaagcaaggagtaagggctgtgaggagac |
116 |
Q |
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| T |
49302421 |
gtggatgtttcagatattcctaggttgaaagagattcttagtgctattccagagagtaagtataagaagctcaagcaaggggtaagggctgtgaggagac |
49302520 |
T |
|
| Q |
117 |
attttactctgaatcagccggctaaaagatttgatgtttttcacatgattttgcactcaatatggctgagaagattgaatataaaattgattagttaatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49302521 |
attttactctgaatcagccggctaaaagatttgatgtttttcacatgattttgcactcaatatggctgagaagattgaatataaaactgattagttaatc |
49302620 |
T |
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| Q |
217 |
tatactaagcataatagagtataccatacactag-atagtgannnnnnnnatttgtaactttggcttccaataggaataggaactcaaatattggcaaca |
315 |
Q |
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| T |
49302621 |
tatactaagcataatagagtataccatacactagtatagtgattttttttatttgtaactttggcttccaataggaataggaactcaaatattggtaaca |
49302720 |
T |
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| Q |
316 |
attagtgacagaatcacagaaagggggctaaagatccaaagaactaaggcattattcacccttgttcatccagagtaacatgtcattgggaaaacttttt |
415 |
Q |
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| T |
49302721 |
attagtgacagaatcacagaaagggggctaaagatccaaagaactaaggcattattcacccttgttcatccagagtaacatgtcattgggaaaacttttt |
49302820 |
T |
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| Q |
416 |
ctttttgttggtacaatttcataggaagttagtctcactgaatattatgcaatagaca---nnnnnnnnnnctgttaaaaagaaggcaaaattgcaccaa |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49302821 |
ctttttgttggtacaatttcataggaagttagtctcactgaatattatgcaatagacatttttttttttttctgttaaaaagaaggcaaaattgcaccaa |
49302920 |
T |
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| Q |
513 |
-gacttgtatcttgat |
527 |
Q |
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||||||||||||||| |
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| T |
49302921 |
ggacttgtatcttgat |
49302936 |
T |
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