View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8654_1 (Length: 345)
Name: NF8654_1
Description: NF8654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8654_1 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 6931966 - 6932175
Alignment:
| Q |
32 |
tagttaaatatagatttttcactttttaatgtcaannnnnnnnataacaacataattttaaaataaaagttatatacttttctttnnnnnnnnnnttaat |
131 |
Q |
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| T |
6931966 |
tagttaaatatagatttttcactttttaatgtcaattttttttataacaacataattttaaaataaaagttatatacttttcttaaaaaaaaaaa--aaa |
6932063 |
T |
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| Q |
132 |
ttagatttatacatacttctctcttatttcaccattaaggtgaataaatgttgttnnnnnnngttgaataagtgacggatccagcttctctctcatgatt |
231 |
Q |
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| T |
6932064 |
ttagatttatatatacttctctctcatttcaacattaaggtgaataaatgttgttaaaaaaagttgaataagtgacggatccagcttctctctcatgatt |
6932163 |
T |
|
| Q |
232 |
atactgtctgaa |
243 |
Q |
| |
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|||||||||||| |
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| T |
6932164 |
atactgtctgaa |
6932175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 6933011 - 6933090
Alignment:
| Q |
246 |
ctgagtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattacca |
325 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6933011 |
ctgagtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattacca |
6933090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6930596 - 6930631
Alignment:
| Q |
1 |
atggtccatgacacatattatttcttaaatttagtt |
36 |
Q |
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| T |
6930596 |
atggtccatgacacatattatttcttaaatttagtt |
6930631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 18436243 - 18436167
Alignment:
| Q |
249 |
agtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattacca |
325 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||||||||||| |
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| T |
18436243 |
agtccttattatgtccatccaagcgatggtcctacctcggtttcaattactcctctacttactggttccaattacca |
18436167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 325
Target Start/End: Original strand, 30151783 - 30151859
Alignment:
| Q |
249 |
agtccttattatgttcatccaagcgatggtccgacctcagtttcaattactcctgtgcttaccggatccaattacca |
325 |
Q |
| |
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|||||||||||||| |||| |||||||||||| |||||||||||||||||||| | ||||| || ||||||||||| |
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| T |
30151783 |
agtccttattatgtccatctaagcgatggtcctacctcagtttcaattactcccctacttactggttccaattacca |
30151859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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