View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8654_3 (Length: 304)
Name: NF8654_3
Description: NF8654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8654_3 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 32069612 - 32069903
Alignment:
| Q |
12 |
agagactatgaagccaccctttttaccaccggagaggtcaaaccgaagcttctcctccggtggcaaatcaaagaaccctttagccaaacgggtcatccga |
111 |
Q |
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| T |
32069612 |
agagactatgaagccaccctttttaccaccggagaggtcaaaccgaagcttctcctccggtggcaaatcaaagaaccctttagccaaacgggtcatctca |
32069711 |
T |
|
| Q |
112 |
gaaatgagcttttgatctacaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgttgcaagtctctattctgaggccat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32069712 |
gaaatgagcttttgatctacaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgttgcaagtctctattctgaggccat |
32069811 |
T |
|
| Q |
212 |
cgacatcgtcgattccggcgagagaaatgattggaatctcattgctgaaattattgtatgcaacttttggacgctcacttacatctcgaatg |
303 |
Q |
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| T |
32069812 |
cgacatcgtcgattccggcgagagaaatgattggaatctcattgctgaaattattgtatgcaacttttggacgctcacttacatctcgaatg |
32069903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 32092626 - 32092902
Alignment:
| Q |
12 |
agagactatgaagccaccctttttaccaccggagaggtcaaaccgaagcttctcctccggtggcaaatcaaagaaccctttagccaaacgggtcatccga |
111 |
Q |
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|||||||||||||||||||||||||||||| || | ||||||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||| | |
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| T |
32092626 |
agagactatgaagccaccctttttaccaccagacatgtcaaaccggagcttctcttctggcggcaaatcaaagaaccctttagcaaaacgagtcatctca |
32092725 |
T |
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| Q |
112 |
gaaatgagcttttgatctacaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgttgcaagtctctattctgaggccat |
211 |
Q |
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| T |
32092726 |
gaaataagctttgaatccacaccatgatcaacaacttgaaagataccccagttttcacaagcttctacaatcttgttgcatatctctgccctacggccac |
32092825 |
T |
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| Q |
212 |
cgacatcgtcgattccggcgagagaaatgattggaatctcattgctgaaattattgtatgcaacttttggacgctca |
288 |
Q |
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| | ||||||||||| | |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||| |
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| T |
32092826 |
cagcgtcgtcgattccatcaagagaaatgattggaatctcgttgctgaagttgttgtaagcaacttttggacgctca |
32092902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 23310970 - 23311242
Alignment:
| Q |
12 |
agagactatgaagccaccctttttaccaccggagaggtcaaaccgaagcttctcctccggtggcaaatcaaagaaccctttagccaaacgggtcatccga |
111 |
Q |
| |
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|||||||| ||||||||||||||||||| | || | ||||||| |||||||||| || ||||||||||||||||||||||||| |||| ||||||| | |
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| T |
23310970 |
agagactacgaagccaccctttttaccatcagacatgtcaaactgaagcttctcttctggtggcaaatcaaagaaccctttagaaaaactggtcatctca |
23311069 |
T |
|
| Q |
112 |
gaaatgagcttttgatctacaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgttgcaagtctctattctgaggccat |
211 |
Q |
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||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||| | |||| |||| ||||| |
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| T |
23311070 |
gaaatgagcttttgatccacgccatgatcaacaacttggaagataccccagttctcgcaagcttttgcaatctggttgcaaatttctactctgcggccac |
23311169 |
T |
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| Q |
212 |
cgacatcgtcgattccggcgagagaaatgattggaatctcattgctgaaattattgtatgcaacttttggacg |
284 |
Q |
| |
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| | ||||||||||| ||||||||||| |||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
23311170 |
caatgtcgtcgattcctgcgagagaaataattggaatctcattgctgaactgattgtaagcaacttttggacg |
23311242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 130 - 284
Target Start/End: Complemental strand, 8623692 - 8623538
Alignment:
| Q |
130 |
acaccatgatcaacaatttggaagataccccagttctcgcaagcctccacaatcttgttgcaagtctctattctgaggccatcgacatcgtcgattccgg |
229 |
Q |
| |
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|||||||||||||||||||| || |||||||| | |||||||||||| |||||||| ||||| ||||| ||| | |||| || ||||||||||| | |
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| T |
8623692 |
acaccatgatcaacaatttgaaaaataccccattcctcgcaagcctcaacaatcttcttgcatatctcttctctacgtccattcacctcgtcgattccag |
8623593 |
T |
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| Q |
230 |
cgagagaaatgattggaatctcattgctgaaattattgtatgcaacttttggacg |
284 |
Q |
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| | ||||| | ||||||||| |||||||| | ||||| |||||||||||||| |
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| T |
8623592 |
caattgaaattactggaatctcgttgctgaattggttgtaagcaacttttggacg |
8623538 |
T |
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