View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8655_low_3 (Length: 365)
Name: NF8655_low_3
Description: NF8655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8655_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 8004233 - 8004571
Alignment:
| Q |
18 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004233 |
cagacatctatctgatagatgagccaagtgcatatcttgattcagaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
8004332 |
T |
|
| Q |
118 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004333 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
8004432 |
T |
|
| Q |
218 |
tgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcaggg |
317 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004433 |
tgtccacaatcattgcttaccgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcaggg |
8004532 |
T |
|
| Q |
318 |
tatcacacacgttaaaattaaaaaattatgttctctctg |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
8004533 |
tatcacacacgttaaaattaaaaaattatgttctctctg |
8004571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 7900873 - 7900541
Alignment:
| Q |
18 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
7900873 |
cagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgtagttgcaaaagtcattaagaggtttattcttcatgcaaagaa |
7900774 |
T |
|
| Q |
118 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaa-ttaattgtactgcaaa |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |
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| T |
7900773 |
aacagcctttatcgttgagcatgatttcatcatggcaaattatcttgctgacaaagttatcgttcttgagggtcaaccttcaatttaattttactgcaaa |
7900674 |
T |
|
| Q |
217 |
ctgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcagg |
316 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
7900673 |
ctgtccacaatcactgcttactgggatgaaccttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgtccctttttaaaaatttagg |
7900574 |
T |
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| Q |
317 |
gtatcacacacgttaaaattaaaaaattatgtt |
349 |
Q |
| |
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|||||| || ||||||||| |||||||||||| |
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| T |
7900573 |
gtatcatgcatgttaaaatttaaaaattatgtt |
7900541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 51518553 - 51518882
Alignment:
| Q |
18 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
51518553 |
cagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgttgctgcaaaagtcatcaagaggtttattcttcatgcaaagaa |
51518652 |
T |
|
| Q |
118 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
51518653 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaat |
51518752 |
T |
|
| Q |
218 |
tgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttcattaattcgttcctttttaaaaattcaggg |
317 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||| |
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| T |
51518753 |
tgtccacaatcattgctgaccgggatgaaccttttcttatctgtaagtgtcgttgtttttcaatggtttcattaattcattccgttttaaaaatttaggg |
51518852 |
T |
|
| Q |
318 |
tatcacacacgttaaaattaaaaaattatg |
347 |
Q |
| |
|
|||||| | ||||||||| ||||| |||| |
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| T |
51518853 |
tatcacgaaagttaaaatttaaaaagtatg |
51518882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 1300619 - 1300350
Alignment:
| Q |
18 |
cagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggtttattcttcatgcaaagaa |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
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| T |
1300619 |
cagacatttatctgatagatgagccaagtgcatatcttgattccgaacagcgtattattgctgcaaaagttatcaagaggtttattcttcatgcaaagaa |
1300520 |
T |
|
| Q |
118 |
aacagcctttatcgttgagcatgatttcatcatggcaacttatcttgctgacaaagttatcgtttatgagggtcaaccttcaattaattgtactgcaaac |
217 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||| |
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| T |
1300519 |
aacagcctttgtggttgagcatgatttcatcatggcaacttatcttgctgacagagttattgtttatgagggtcaaccttcaattgactgtactgcaaat |
1300420 |
T |
|
| Q |
218 |
tgtccacaatcattgcttactgggatgaatcttttcttatctgtaagtgtcattgtttttcaatggtttc |
287 |
Q |
| |
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| |||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
1300419 |
tctccacaatcactgctgactgggatgaaccttttcttatcagtaagtgtcattgtttttcaatggtttc |
1300350 |
T |
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