View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8655_low_4 (Length: 216)
Name: NF8655_low_4
Description: NF8655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8655_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 21133163 - 21132975
Alignment:
| Q |
14 |
cacacaatattattattttcctattgatctgtgctaacgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatagata |
113 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
21133163 |
cacacaatattgttattttcctattgatccgtgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatatata |
21133064 |
T |
|
| Q |
114 |
actcttgagatttgtatatgcaccaaagattggcagcaatccatgtattttgcaaggatattcaattattcattaatggttaaacacca |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21133063 |
actcttgagatttgtatatgcaccaaagattggcagcaatccatgtattttgcaaggatattcaattattcattcatggttaaacacca |
21132975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 3623681 - 3623481
Alignment:
| Q |
16 |
cacaatattattattttcctattgatctgtgcta-----acgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatag |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3623681 |
cacaacattattattttcctattgatctgtgctatgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatag |
3623582 |
T |
|
| Q |
111 |
ataactcttgagatttgtatatgcaccaaagattggcagc---------aatccatgtattttgcaaggatattcaattattcattaatggttaaacacc |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3623581 |
ataactcttgagatttgtatatgcaccaaagattggcagcaatggcagaaatccatgtattttgcaaggatgttcaattattcattaatggttaaacacc |
3623482 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
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|
| T |
3623481 |
a |
3623481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 17071728 - 17071528
Alignment:
| Q |
16 |
cacaatattattattttcctattgatctgtgcta-----acgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatag |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17071728 |
cacaacattattattttcctattgatctgtgctatgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatag |
17071629 |
T |
|
| Q |
111 |
ataactcttgagatttgtatatgcaccaaagattggcagc---------aatccatgtattttgcaaggatattcaattattcattaatggttaaacacc |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17071628 |
ataactcttgagatttgtatatgcaccaaagattggcagcaatggcagaaatccatgtattttgcaaggatgttcaattattcattaatggttaaacacc |
17071529 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
|
|
| T |
17071528 |
a |
17071528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 34600765 - 34600565
Alignment:
| Q |
16 |
cacaatattattattttcctattgatctgtgcta-----acgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatag |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34600765 |
cacaacattattattttcctattgatctgtgctatgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatag |
34600666 |
T |
|
| Q |
111 |
ataactcttgagatttgtatatgcaccaaagattggcagc---------aatccatgtattttgcaaggatattcaattattcattaatggttaaacacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34600665 |
ataactcttgagatttgtatatgcaccaaagattggcagcaatggcagaaatccatgtattttgcaaggatgttcaattattcattaatggttaaacacc |
34600566 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
|
|
| T |
34600565 |
a |
34600565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 47688027 - 47688227
Alignment:
| Q |
16 |
cacaatattattattttcctattgatctgtgct-----aacgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatag |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
47688027 |
cacaacattattattttcctattgatctgtgctatgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatag |
47688126 |
T |
|
| Q |
111 |
ataactcttgagatttgtatatgcaccaaagattggcagc---------aatccatgtattttgcaaggatattcaattattcattaatggttaaacacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47688127 |
ataactcttgagatttgtatatgcaccaaagattggcagcaatggcagaaatccatgtattttgcaaggatgttcaattattcattaatggttaaacacc |
47688226 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
|
|
| T |
47688227 |
a |
47688227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 43147176 - 43146976
Alignment:
| Q |
16 |
cacaatattattattttcctattgat-----ctgtgctaacgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatag |
110 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
43147176 |
cacaacattattattttcctattgatctatgctatgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatag |
43147077 |
T |
|
| Q |
111 |
ataactcttgagatttgtatatgcaccaaagattggcagc---------aatccatgtattttgcaaggatattcaattattcattaatggttaaacacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
43147076 |
ataactcttgagatttgtatatgcaccaaagattggcagcaatggcagaaatccatgtattttgcaaggatgttcaattattcattaatggttaaacacc |
43146977 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
|
|
| T |
43146976 |
a |
43146976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 12920201 - 12920057
Alignment:
| Q |
23 |
ttattattttcctattgatctgtgctaacgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatagataactcttgag |
122 |
Q |
| |
|
||||| ||||||| | |||||||| ||| ||||||||||||| ||||| |||||| ||||| | ||||||||| || ||||||||||||||||| ||| |
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|
| T |
12920201 |
ttattgttttcctgtcaatctgtgcaaacataacaaaacctgatgttatttcttcttctttatcgatctcaattaaactccatcatagataactctagag |
12920102 |
T |
|
| Q |
123 |
atttgtatatgcaccaaagattggcagcaatccatgtattttgca |
167 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||||||||| |
|
|
| T |
12920101 |
atttgtatatgcatcaaggattggcagcaacccatgtattttgca |
12920057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 18174217 - 18174417
Alignment:
| Q |
16 |
cacaatattattattttcctattgatctgtgct-----aacgtaacaaaacctgaagttatctcttctcctttacgggtctcaattagaccccatcatag |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
18174217 |
cacaacattattattttcctattgatctgtgctatgctaacgtaacaaaacctgaagttatctcttctcctttacggatctcaattagaccccatcatag |
18174316 |
T |
|
| Q |
111 |
ataactcttgagatttgtatatgcaccaaagattggcagc---------aatccatgtattttgcaaggatattcaattattcattaatggttaaacacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18174317 |
ataactcttgagatttgtatatgcaccaaagattggcagcaatggcagaaatccatgtattttgcaaggatgttcaattattcattaatggttaaacacc |
18174416 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
|
|
| T |
18174417 |
a |
18174417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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