View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8656_high_4 (Length: 238)
Name: NF8656_high_4
Description: NF8656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8656_high_4 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 20364 - 20179
Alignment:
| Q |
1 |
ataaaaacacgatgaacttgtctttgctactcaaatatcaaacattagcacttatattcattatcatagccgttaccaaagttggttgcttctatttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
20364 |
ataaaaacacgatgaacttgtctttgctactcaaatatcaaacattagcacttatattcattatcatagctgttatcaaagttggttgcttctatttcaa |
20265 |
T |
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| Q |
101 |
tttcccaaacttccaagaaaaggataaggccaatttgttactaagtgaaaactcaaaaatatacttacatgccatacaaataaccc |
186 |
Q |
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| T |
20264 |
ttttccaaacttccaagaaaaggataaggccaatttgttactaagtgaaaactcaaaaatatacttacatgccacacaaataaccc |
20179 |
T |
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Target: scaffold0015; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 36023 - 36138
Alignment:
| Q |
1 |
ataaaaacacgatgaacttgtctttgctactcaaatatcaaacattagcacttatattcattatcatagccgttaccaaagttggttgcttctatttcaa |
100 |
Q |
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||||||||| | |||||||||||||||| |||||||||||| |||||||| | ||||||| |||||||||| | ||||||||| || ||| |||||||| |
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| T |
36023 |
ataaaaacatggtgaacttgtctttgctgctcaaatatcaatcattagcaatcatattcactatcatagccttaaccaaagttaattccttttatttcaa |
36122 |
T |
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| Q |
101 |
tttcccaaacttccaa |
116 |
Q |
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|||||||| ||||||| |
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| T |
36123 |
tttcccaaccttccaa |
36138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 10356 - 10439
Alignment:
| Q |
33 |
aaatatcaaacattagcacttatattcattatcatagccgttaccaaagttggttgcttctatttcaatttcccaaacttccaa |
116 |
Q |
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||||||||| |||| || | ||||||| |||||||||| | ||||||||| || ||| |||||||||||||||| ||||||| |
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| T |
10356 |
aaatatcaattattatcaatcatattcactatcatagccttaaccaaagttaattccttttatttcaatttcccaaccttccaa |
10439 |
T |
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