View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8656_low_2 (Length: 542)
Name: NF8656_low_2
Description: NF8656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8656_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 40749986 - 40749467
Alignment:
| Q |
19 |
tgaagtccttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcatattggactcttcattctggaaatttagagttgtaggagatgagt |
118 |
Q |
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| T |
40749986 |
tgaagtccttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcatattggactcttcattctggaaatttagagttgtaggagatgagt |
40749887 |
T |
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| Q |
119 |
gtcttgcactttctacggctaatgcgtcgcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcattt |
218 |
Q |
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| T |
40749886 |
gtcttgcactttctacggctaatgcgtcgcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcattt |
40749787 |
T |
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| Q |
219 |
acactatgcagtagtactagatcattgtcttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaatt |
318 |
Q |
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| T |
40749786 |
acactatgcagtagtactagatcattgtcttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaatt |
40749687 |
T |
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| Q |
319 |
gaaaagaaaaacagttttttcatccacatcaaaaacaataaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatt |
418 |
Q |
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| T |
40749686 |
gaaaagaaaaacagttttttcatccacatcaaaaacaagaaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatt |
40749587 |
T |
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| Q |
419 |
tgcatgactttggtctttgaaaccaaagtcacctaaattttttgatactnnnnnnnnnngtgaattgaattaccttgagaagagtgtaccacaatcacac |
518 |
Q |
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| T |
40749586 |
tgcatgactttggtctttgaaaccaaagtcacctaaatttttttatactaaaaaaaaaagtgaattgaattaccttgagaagagtgtaccacaatcacac |
40749487 |
T |
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| Q |
519 |
ttatattctctagtaccaca |
538 |
Q |
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| T |
40749486 |
ttatattctctagtaccaca |
40749467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 542
Target Start/End: Original strand, 31644073 - 31644111
Alignment:
| Q |
504 |
gtaccacaatcacacttatattctctagtaccacaggtt |
542 |
Q |
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| T |
31644073 |
gtaccacaatcacatttatattctcgagtaccacaggtt |
31644111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 538
Target Start/End: Complemental strand, 42287244 - 42287194
Alignment:
| Q |
488 |
ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
538 |
Q |
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| T |
42287244 |
ttacctagagaagagggtgccacaatcacatctatattctctagtaccaca |
42287194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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