View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8656_low_4 (Length: 329)
Name: NF8656_low_4
Description: NF8656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8656_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 134987 - 135284
Alignment:
| Q |
18 |
tctttcccttgctatattgagatgccacaatgttggcaaataaaaattgaagactgcccagagatgaagaccttttggttcgaaggaatcttatacaccc |
117 |
Q |
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| T |
134987 |
tctttcccttgctatattgagatgccacaatgtcggcgaataaaaattgaagactgcccagagatgaagaccttttggttcgaaggaatcttatacaccc |
135086 |
T |
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| Q |
118 |
catatctttatgaaatttctttaaaaaataccaaatttgagaaatatgaaggttttaatgacgtgatacaacgacacaataaatgatcgagtgttggtat |
217 |
Q |
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| T |
135087 |
cacgtctttatgaaatttctttaaaaaataccaaatttgacgaatacgaagatgttaatgacgtgatacaacgacacaataaatgatcgagtgttggtat |
135186 |
T |
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| Q |
218 |
gaggtattacaactttctccgcctctttctccttctgtcttactcttaactatgtctctttc--ctcggtcgttctttcatctctggttttgagaaga |
313 |
Q |
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| T |
135187 |
gaggtattacaactttctccgcctctttctccttctgtcttactcttaactatgtctctttcctctcggtcgttctttcatctctggttttgagaaga |
135284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 34549896 - 34549691
Alignment:
| Q |
20 |
tttcccttgctatattgagatgccacaatgttggcaaataaaaattgaagactgcccagagatgaagaccttttggttcgaaggaatcttatacacccca |
119 |
Q |
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| T |
34549896 |
tttcccttgctatgttgagatgccaaaatgtgagttgatagtaattaatgactgcccagagatgaagaccttttggtacgaaggaatcttatacactcca |
34549797 |
T |
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| Q |
120 |
tatctttatgaaatttctttaaaaaataccaaatttgagaaatatgaaggttttaatgacgtgatacaacgacacaataaatgatcgagtg-ttggtatg |
218 |
Q |
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| T |
34549796 |
ggtcttgaagagatttatgtagaaaatactaaatttgacaaagatgaagatgttaatgaagtgatacaacgacagaataaatgattgagtgtttggtgtg |
34549697 |
T |
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| Q |
219 |
aggtat |
224 |
Q |
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|||||| |
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| T |
34549696 |
aggtat |
34549691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 34377533 - 34377689
Alignment:
| Q |
69 |
gactgcccagagatgaagaccttttggttcgaaggaatcttatacaccccatatctttatgaaatttctttaaaaaataccaaatttgagaaatatgaag |
168 |
Q |
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| T |
34377533 |
gactgtccagagatgaagaccttttggtacaatggaatcttgtacactccaggtatttatagaatttgtgtagaagataccaaatttgacatagatgaag |
34377632 |
T |
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| Q |
169 |
gttttaatgacgtgatacaacgacacaataaatgatcgagtg-ttggtatgaggtat |
224 |
Q |
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| T |
34377633 |
atgttaatgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtat |
34377689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 15890655 - 15890591
Alignment:
| Q |
62 |
aattgaagactgcccagagatgaagaccttttggttcgaaggaatcttatacaccccatatcttt |
126 |
Q |
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| T |
15890655 |
aattgaagactgccatgagatgaagactttttggttcaatggaaccttgtacacaccaaatcttt |
15890591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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