View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8656_low_5 (Length: 323)
Name: NF8656_low_5
Description: NF8656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8656_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 50370013 - 50369718
Alignment:
| Q |
12 |
agagattccaccctttctatatattgacatacaattaaacaaatgccaacacacactgcatcagcatcaccaacactcaactccctcaatccttttccct |
111 |
Q |
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| T |
50370013 |
agagattccaccctttctatatattgacatacaattaaacaaatgccaacacacactgcatcagcatcaccaacactcaactccctcaatccttttccct |
50369914 |
T |
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| Q |
112 |
ttttaaaaacttgatcctatccatggaggattctcagtttgacgtgattattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaa |
211 |
Q |
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| T |
50369913 |
tgttaaaaacttgatcctatccatggaggattctcagtttgacgtgattattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaa |
50369814 |
T |
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| Q |
212 |
aggggtctcaaaacactcttgcttgaacaatttgactttctccaccaccgtggctcttcccacggtgaatcccgcacaattcgtgctacctatatt |
307 |
Q |
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| T |
50369813 |
aggggtctcaaaacactcttgcttgaacaatttgactttctccaccaccgtggctcttcccacggtgaatcccgcacaattcgtgctacctatatt |
50369718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 50380033 - 50379897
Alignment:
| Q |
158 |
attattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaaaggggtctcaaaacactcttgcttgaacaatttgactttctccacc |
257 |
Q |
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| T |
50380033 |
attattgtcggcgccggcgtcatgggaagctccaccgcctactacgctgccaaacgaggcctcaaaaccctggttctcgaacaattcgattttcttcacc |
50379934 |
T |
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| Q |
258 |
accgtggctcttcccacggtgaatcccgcacaattcg |
294 |
Q |
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| T |
50379933 |
accgtggttcctcccacggtgaatcccgcacaattcg |
50379897 |
T |
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