View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_high_10 (Length: 248)
Name: NF8657_high_10
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 52616920 - 52616808
Alignment:
| Q |
1 |
ttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaagattattgattgaaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52616920 |
ttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaagattattgattgaaatgg |
52616821 |
T |
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| Q |
101 |
agttggattattg |
113 |
Q |
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|||||| |||||| |
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| T |
52616820 |
agttgggttattg |
52616808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 52624486 - 52624374
Alignment:
| Q |
1 |
ttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaagattattgattgaaatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624486 |
ttttttccttcttctttttcacttccataggtggtgcatgtgctaattgtgcaagagggtagttgaggtgttgctatctgaagattattgattgaaatgg |
52624387 |
T |
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| Q |
101 |
agttggattattg |
113 |
Q |
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|||||| |||||| |
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| T |
52624386 |
agttgggttattg |
52624374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 52616760 - 52616647
Alignment:
| Q |
111 |
ttgatctaagagacgtggggcctttttggggggaaggggagatgacaatacacatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgat |
210 |
Q |
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| T |
52616760 |
ttgatctaagagacgtggggcctttttggggggaaggggagatgaca-------tgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgat |
52616668 |
T |
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| Q |
211 |
tttgttgtcttatccacatac |
231 |
Q |
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| T |
52616667 |
tttgttgtcttatccacatac |
52616647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 52624291 - 52624222
Alignment:
| Q |
162 |
acatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgattttgttgtcttatccacatac |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624291 |
acatgacatgtctcagtgcagcgcccgtgatcccgaccacccgtctgattttgttgtcttatccacatac |
52624222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 52624326 - 52624297
Alignment:
| Q |
111 |
ttgatctaagagacgtggggcctttttggg |
140 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52624326 |
ttgatctaagagacgtggggcctttttggg |
52624297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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