View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_high_11 (Length: 240)
Name: NF8657_high_11
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_high_11 |
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| [»] scaffold0548 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 35048301 - 35048256
Alignment:
| Q |
13 |
atacaaaatcattaagaataaaaaaggagtgcgcgtgacttttaca |
58 |
Q |
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| T |
35048301 |
atacaaaatcattaagaataaaaaaggagtgcgcgtgacttttaca |
35048256 |
T |
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Target: scaffold0548 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 6605 - 6488
Alignment:
| Q |
119 |
gcctacattatttacctatcgattgaactccagattataaaaac------------ggaacctaagggttnnnnnnntgatttctatattaatgtatgca |
206 |
Q |
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| T |
6605 |
gcctacattatttacctatcggttgaactccagattataaaaaccgttttcttataggaacctaagggttaaaaaaatgatttctatattaatgtatgca |
6506 |
T |
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| Q |
207 |
ttaatgtaatctataaat |
224 |
Q |
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||||| ||||||||||| |
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| T |
6505 |
ttaattaaatctataaat |
6488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 11311797 - 11311914
Alignment:
| Q |
119 |
gcctacattatttacctatcgattgaactccagattataaaaac------------ggaacctaagggttnnnnnnntgatttctatattaatgtatgca |
206 |
Q |
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| T |
11311797 |
gcctacattatttacctatcggttgaactccagattataaaaaccgttttcttataggaacctaagggttaaaaaaatgatttctatattaatgtatgca |
11311896 |
T |
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| Q |
207 |
ttaatgtaatctataaat |
224 |
Q |
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| T |
11311897 |
ttaattaaatctataaat |
11311914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 49622049 - 49622005
Alignment:
| Q |
13 |
atacaaaatcattaagaataaaaaaggagtgcgcgtgacttttaca |
58 |
Q |
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| T |
49622049 |
atacaaaatcattaagaata-aaaaggagtgtgcgtgacttttaca |
49622005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 49621983 - 49621953
Alignment:
| Q |
64 |
gttgtaaagtcgtgtgaaatagcaatactca |
94 |
Q |
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| T |
49621983 |
gttgtaaagtcgtgtgaaatagcaatactca |
49621953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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