View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8657_high_4 (Length: 410)
Name: NF8657_high_4
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 33499604 - 33499206
Alignment:
| Q |
1 |
agatagacaaatgtgataccgatctagatgtttcagaaagtatcccagttaaagaccatgagcatgtttttctgaaagagtatgagagctttgataagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499604 |
agatagacaaatgtgataccgatctagatgtttcagtaagtatcccagttaaagaccatgagcatgtttttctgaaagagtatgagagctttgataagga |
33499505 |
T |
|
| Q |
101 |
gacctctttgttgacaaagcgatgccaatgtggtttttcagtccaagtagaagaattatagtgttcaaatgaaatacattcatgttcatgccatctgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33499504 |
gacctctttgttgacaaagcgatgccaatgtggtttttcagtccaagtagaagaattatagtgttcaaatgaaatacattcatgttgatgccatctgtat |
33499405 |
T |
|
| Q |
201 |
aactaatcagtagatgatgttagagtatttttccacccagttttgtagtctctagaactcataatcattgttttatacttttattagagacttaggatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33499404 |
aactaatcagtagatgatgttagagtatttttccacccagttttgtagtctctagaactcataatcattgttttatacttttattagagacttaggatta |
33499305 |
T |
|
| Q |
301 |
gagatggatttggttatacaattggatgtaagatataatatgttgtgtatataatcaaaactact------ttcttgttgagcaaaactactttctctt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33499304 |
gagatggatttggttatacaattggatgtaagatataatatgttgtgtatataatcaaaactactttctctttcttgttgagcaaaactactttctctt |
33499206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University