View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8657_high_7 (Length: 307)
Name: NF8657_high_7
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 15775974 - 15775669
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15775974 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
15775875 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15775874 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
15775775 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
15775774 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggcattgctatttga |
15775675 |
T |
|
| Q |
301 |
attgaa |
306 |
Q |
| |
|
|||||| |
|
|
| T |
15775674 |
attgaa |
15775669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 15776032 - 15775884
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggaga-ttgaaataagaatttgaaactgacttgacgtcatct |
209 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || ||| ||| || || || |||||||||||| || |
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| T |
15776032 |
gggacaaactgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatttgtaatggga--ttagaattgacttgacgtcgtcc |
15775935 |
T |
|
| Q |
210 |
tagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacag |
260 |
Q |
| |
|
| |||||||||| | || |||||||||||||| |||||||| | |||||| |
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|
| T |
15775934 |
tgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacag |
15775884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 24813136 - 24813441
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24813136 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
24813235 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24813236 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
24813335 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24813336 |
acgtcatcttagtttgaaaggtggaaagtggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggcattgctatttga |
24813435 |
T |
|
| Q |
301 |
attgaa |
306 |
Q |
| |
|
|||||| |
|
|
| T |
24813436 |
attgaa |
24813441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 24813078 - 24813226
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggaga-ttgaaataagaatttgaaactgacttgacgtcatct |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || ||| ||| || || || |||||||||||| || |
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|
| T |
24813078 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatttgtaatggga--ttagaattgacttgacgtcgtcc |
24813175 |
T |
|
| Q |
210 |
tagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacag |
260 |
Q |
| |
|
| |||||||||| | || |||||||||||||| |||||||| | |||||| |
|
|
| T |
24813176 |
tgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacag |
24813226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 3791136 - 3790831
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3791136 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcataggataacagaggtagaag |
3791037 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3791036 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
3790937 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3790936 |
acgtcatcttagtttgaaaggtggaacctggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggcattgctatttga |
3790837 |
T |
|
| Q |
301 |
attgaa |
306 |
Q |
| |
|
|||||| |
|
|
| T |
3790836 |
attgaa |
3790831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 3791194 - 3791130
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagatt |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
3791194 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatt |
3791130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 13178091 - 13178396
Alignment:
| Q |
1 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13178091 |
ggggatttgtaatgggattagaattgacttgacgtcgtcctgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacagaggtagaag |
13178190 |
T |
|
| Q |
101 |
taagttgactgggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13178191 |
taagttgactgggacaagctgttcttgaactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttg |
13178290 |
T |
|
| Q |
201 |
acgtcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
13178291 |
acatcatcttagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgatcattgacttgaaattggcattgctatttga |
13178390 |
T |
|
| Q |
301 |
attgaa |
306 |
Q |
| |
|
|||||| |
|
|
| T |
13178391 |
attgaa |
13178396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 13178033 - 13178181
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggaga-ttgaaataagaatttgaaactgacttgacgtcatct |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| || ||| ||| || || || |||||||||||| || |
|
|
| T |
13178033 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggatttgtaatggga--ttagaattgacttgacgtcgtcc |
13178130 |
T |
|
| Q |
210 |
tagtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacag |
260 |
Q |
| |
|
| |||||||||| | || |||||||||||||| |||||||| | |||||| |
|
|
| T |
13178131 |
tgatttgaaaggtagcaattggccaaactgcaccggctcacaggataacag |
13178181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 111 - 306
Target Start/End: Complemental strand, 3452655 - 3452460
Alignment:
| Q |
111 |
gggacaagctgttcttggactgaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttgacgtcatctt |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3452655 |
gggacaagctgttcttggattgaactagccacttatccaaacatggatggaaatcactggggattgaaataagaatttgaaactgacttgacgtcatctt |
3452556 |
T |
|
| Q |
211 |
agtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttgaattgaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3452555 |
agtttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggcattgctatttgaattgaa |
3452460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 114 - 306
Target Start/End: Original strand, 26267899 - 26268091
Alignment:
| Q |
114 |
acaagctgttcttggact-gaactagccacttatccgaacatgtatgggaatcactggagattgaaataagaatttgaaactgacttgacgtcatcttag |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| | | | ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26267899 |
acaagctgttcttggacttgaactagccacttgaccgaaca-gaaacatattcactggggattgaaataagaatttgaaactgacttgacgtcatcttag |
26267997 |
T |
|
| Q |
213 |
tttgaaaggtggaaactggccaaactgcactggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttgaattgaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26267998 |
tttgaaaggtggaaactggccaaactgcactggctcacaaggtaataggggtgttgattattgacttgaaattggcattgctatttgaattgaa |
26268091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 27622631 - 27622694
Alignment:
| Q |
243 |
tggctcacaaggtaacaggggtgttgattattgacttgaaattggccttgctatttgaattgaa |
306 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27622631 |
tggctcacaagataacaggggtgttggttattgacttgaaattggcattgctatttgaattgaa |
27622694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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