View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_10 (Length: 281)
Name: NF8657_low_10
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 52624890 - 52624616
Alignment:
| Q |
7 |
tttggtgttaggtgggaccatcggagctcggcgatgacaccagacgaggaggtgttttacctggtggcatttctgagatcagctttggatgctgagacac |
106 |
Q |
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| T |
52624890 |
tttggtgttaggtgggaccatcggagctcggcggtgacaccagacgaggaggtgttttacctggtggcatttctgagatcagctttggatgctgagacac |
52624791 |
T |
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| Q |
107 |
tggagcacctgactaatcagaaccgtcagatcctgggattctgtcatgattcgaagataggggttaaacagtacctaccccattacacaacaatgcagga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624790 |
tggagcacctgactaatcagaaccgtcagatcctgggattctgtcatgattcgaagataggggttaaacagtacctaccccattacacaacaatgcagga |
52624691 |
T |
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| Q |
207 |
gtggatggaccactttggagataaatggacccaattcaatgccatgaagatgcaattcgaccctcaacgaatctt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52624690 |
gtggatggaccactttggagataaatggacccaattcaatgccatgaagatgcaattcgaccctcaacgaatctt |
52624616 |
T |
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