View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_14 (Length: 239)
Name: NF8657_low_14
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 2357580 - 2357454
Alignment:
| Q |
14 |
gaagtgaaaattttataaaaatgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagttcgtatagagttt |
113 |
Q |
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| T |
2357580 |
gaagtgaaaattttataaaaatgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagttcgtatagagttt |
2357481 |
T |
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| Q |
114 |
ttctttctgttccattggccctccact |
140 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2357480 |
ttctttctgttccattggccctccact |
2357454 |
T |
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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 2356592 - 2356528
Alignment:
| Q |
160 |
ttgtattgataaagcgaatataatgaaagtatacataccaacatcgtggctttgattgtggtatc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2356592 |
ttgtattgataaagcgaatataatgaaagtatacataccaacatcgtggctttgattgtggtatc |
2356528 |
T |
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