View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_15 (Length: 237)
Name: NF8657_low_15
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 2326065 - 2326272
Alignment:
| Q |
19 |
cctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcc |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326065 |
cctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcc |
2326164 |
T |
|
| Q |
119 |
aaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2326165 |
aaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctc |
2326264 |
T |
|
| Q |
219 |
tctgctcc |
226 |
Q |
| |
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||| |||| |
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|
| T |
2326265 |
tcttctcc |
2326272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 2329793 - 2329971
Alignment:
| Q |
32 |
ccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta |
131 |
Q |
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|||||||| || || ||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2329793 |
ccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtccta |
2329892 |
T |
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| Q |
132 |
tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
210 |
Q |
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||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2329893 |
tcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa |
2329971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 2320211 - 2320402
Alignment:
| Q |
19 |
cctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcc |
118 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
2320211 |
cctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgcc |
2320310 |
T |
|
| Q |
119 |
aaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
210 |
Q |
| |
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||||||||||||||||||| | | ||||||| || |||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2320311 |
aaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2320402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 2292891 - 2293088
Alignment:
| Q |
19 |
cctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcc |
118 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
2292891 |
cctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgcc |
2292990 |
T |
|
| Q |
119 |
aaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatc |
216 |
Q |
| |
|
||||||||||||||||||| | | ||||||| || |||||||||||| ||| ||||| | ||||||||||||| | |||||||||||| ||||| |
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| T |
2292991 |
aaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatc |
2293088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 2309222 - 2309413
Alignment:
| Q |
19 |
cctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcc |
118 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
2309222 |
cctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgcc |
2309321 |
T |
|
| Q |
119 |
aaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
210 |
Q |
| |
|
||||||||||||||||||| | | ||||||| || ||||||||||| |||| ||||| ||||||||| ||||| | |||||||||||| |
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| T |
2309322 |
aaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa |
2309413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 210
Target Start/End: Original strand, 2302512 - 2302701
Alignment:
| Q |
21 |
tccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaa |
120 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||| || ||| || | |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2302512 |
tccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaa |
2302611 |
T |
|
| Q |
121 |
acatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
210 |
Q |
| |
|
||||||||||||||||| ||| | ||||| || |||||||||||| |||| |||| ||||||||||||||| | |||||||||||| |
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| T |
2302612 |
acatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaa |
2302701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 2350080 - 2350271
Alignment:
| Q |
19 |
cctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgcc |
118 |
Q |
| |
|
|||||||||| | ||||| || |||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| ||||||| ||||| || |
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|
| T |
2350080 |
cctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacacc |
2350179 |
T |
|
| Q |
119 |
aaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
210 |
Q |
| |
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||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
2350180 |
aaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa |
2350271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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