View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_16 (Length: 232)
Name: NF8657_low_16
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33860851 - 33861079
Alignment:
| Q |
1 |
aaatggaactttgtctaggttatagccaagctttccccaaaaaggaatgaagtttgctctgaatttcttgaaacctaaacatgcagtagttagcggcatc |
100 |
Q |
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| T |
33860851 |
aaatggaactttgtctaggttatagccaagcttttcc-aaaaagcaatgaagtttgctctgaatttcttgaaacctaaacatgcagcagttagcggcatc |
33860949 |
T |
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| Q |
101 |
catctgtaagagatagatgataattaggtacttaaataaatggattattnnnnnnnnttgaaatacaagtttaaaggggctgaaaatataaatacaaata |
200 |
Q |
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| T |
33860950 |
catctgtaagagatagatgataattaggtacttaaataaatggattattaaaaaaaattgaaatacaagtttaaaggggctgaaaatataaatagaa--a |
33861047 |
T |
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| Q |
201 |
taccttgttgatgcagcagatcatttgaggca |
232 |
Q |
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| T |
33861048 |
taccttgttgatgcagcagatcatttgaggca |
33861079 |
T |
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