View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_18 (Length: 230)
Name: NF8657_low_18
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 44776304 - 44776513
Alignment:
| Q |
19 |
caacgtccctactcaacaaactctcatccatgtcagaactaaaacaacttcaagccataatcaccaaatcaggtcttcactctca-----------caac |
107 |
Q |
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| T |
44776304 |
caacgtccctactcaacaaactctcatccatgtcagaactaaaacaacttcaagccataatcaccaaatcaggtcttcactctcacattcccctcacaac |
44776403 |
T |
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| Q |
108 |
caaactcattttcttttcagctctttctccattcggtaacctctcacacgcttattctctttttcaacattcttccattcttatccacaaccccttcatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44776404 |
caaactcattttcttttcagctctttctccattcggtaacctctcacacgcttattctctttttcaacattcttccattcttatccacaaccccttcatt |
44776503 |
T |
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| Q |
208 |
tccaacacca |
217 |
Q |
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|||||||||| |
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| T |
44776504 |
tccaacacca |
44776513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 28370208 - 28369999
Alignment:
| Q |
19 |
caacgtccctactcaacaaactctcatccatgtcagaactaaaacaacttcaagccataatcaccaaatcaggtcttcactctcaca-----------ac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28370208 |
caacgtccctactcaacaaactctcatccatatcagaactaaaacaacttcaagccataatcaccaaatcaggtcttcactctcacattcccctcacaac |
28370109 |
T |
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| Q |
108 |
caaactcattttcttttcagctctttctccattcggtaacctctcacacgcttattctctttttcaacattcttccattcttatccacaaccccttcatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28370108 |
caaactcattttcttttcagctctttctccattcggtaacctctcacacgcttattctctttttcaacattcttccattcttatccacaaccccttcatt |
28370009 |
T |
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| Q |
208 |
tccaacacca |
217 |
Q |
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|||||||||| |
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| T |
28370008 |
tccaacacca |
28369999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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