View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_2 (Length: 610)
Name: NF8657_low_2
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 45242841 - 45243437
Alignment:
| Q |
1 |
ttttaaaattttaaattgcaaaatacgaatttgattttatacgaagaaagttattacacacaggaggaaatggtggagccagcagtgaatggagcaaaga |
100 |
Q |
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| T |
45242841 |
ttttaaaattttcaattgcaaaataccaatttgattttatacgaagaaagttattacacacaggaggaaatggtggagccagcagtgaatggagcaaaga |
45242940 |
T |
|
| Q |
101 |
atgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatatggaccccaataggagtgttgatgtaga |
200 |
Q |
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| T |
45242941 |
atgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatatggaccccaataggagtgttgatgtaga |
45243040 |
T |
|
| Q |
201 |
ggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggtcaataataataatattcacttcccttc---at-------ttcatttatg |
290 |
Q |
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| T |
45243041 |
ggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggtcaataataata---ttcacttcatttatatatgtagaggttgatttagg |
45243137 |
T |
|
| Q |
291 |
tagtggttgattgatttgaaattttgttgatattgtagaattggtattgctatgggaaagcagtggcagaagaagcagcatgggatgtagcaaaagagaa |
390 |
Q |
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| T |
45243138 |
-agtg-ttgattgatttgaaattttgttgatattgtagaattggtattgctatgggaaagcagtggcagaagcagcagcatgggatgtagcaaaagagaa |
45243235 |
T |
|
| Q |
391 |
aggtgtggatttggttgtagtgaatccagttttggttcttggaccattgctacaacctacaatcaatgcaagcacaattcacatactaaaatacctaact |
490 |
Q |
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| T |
45243236 |
aggtgtggatttggttgtagtgaatccagttttggttcttggaccattgctacaacctacaatcaatgcaagcacaattcacatactaaaatacctaact |
45243335 |
T |
|
| Q |
491 |
ggttcagccaagacctatgcaaatgcaacacaagcttatgttcatgttagggatgttgcattagctcacatacttgtttatgagaaaccttctgcttctg |
590 |
Q |
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| T |
45243336 |
ggttcagctaagacctatgcaaatgcaacacaagcttatgttcatgttagggatgttgcattagctcacatacttgtttatgagaaaccttctgcttctg |
45243435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 327 - 592
Target Start/End: Original strand, 863991 - 864256
Alignment:
| Q |
327 |
agaattggtattgctatgggaaagcagtggcagaagaagcagcatgggatgtagcaaaagagaaaggtgtggatttggttgtagtgaatccagttttggt |
426 |
Q |
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| T |
863991 |
agaactggtattgttatgggaagacagtggctgaacaatcagcatgggatatagcaaaagaaaatcaagttgatttggttgtggtgaacccagttgtagt |
864090 |
T |
|
| Q |
427 |
tcttggaccattgctacaacctacaatcaatgcaagcacaattcacatactaaaatacctaactggttcagccaagacctatgcaaatgcaacacaagct |
526 |
Q |
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| T |
864091 |
tcttggaccattgttacaaccaacaattaatgctagtacaattcacatactcaagtaccttaatggtgctgcaaaaacttatgtgaatgcaacacaatct |
864190 |
T |
|
| Q |
527 |
tatgttcatgttagggatgttgcattagctcacatacttgtttatgagaaaccttctgcttctggt |
592 |
Q |
| |
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| T |
864191 |
tatgttcatgttaaggatgtggcattagcacatcttcttgtttatgagacaaattctgcttctggt |
864256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 863727 - 863902
Alignment:
| Q |
76 |
gagccagcagtgaatggagcaaagaatgtgatcatagctggtgcagaagcaaaagtgaggcgcgtggttttcacatcatcaattggtgcagtctatatgg |
175 |
Q |
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| T |
863727 |
gagccagcagtgaatggaactaagaatgtgattatagcgtccgcggaagctaaagtgcgacgtgttgttttcacttcatcgattggaacggtctatatgg |
863826 |
T |
|
| Q |
176 |
accccaataggagtgttgatgtagaggttgatgagtcttgctggagtgatttggagttttgcaagaaaaccaaggt |
251 |
Q |
| |
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| T |
863827 |
acccaaatactagtagagatgttgtcgttgatgaatcatattggagtgatttagagcattgcaagaacaccaaggt |
863902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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