View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8657_low_20 (Length: 216)

Name: NF8657_low_20
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8657_low_20
NF8657_low_20
[»] chr2 (1 HSPs)
chr2 (1-200)||(33861080-33861279)
[»] chr5 (1 HSPs)
chr5 (24-199)||(16349406-16349581)
[»] chr4 (1 HSPs)
chr4 (1-173)||(4231711-4231883)
[»] chr1 (11 HSPs)
chr1 (1-196)||(43045238-43045433)
chr1 (1-196)||(43045691-43045886)
chr1 (1-196)||(43066521-43066716)
chr1 (1-196)||(43084119-43084314)
chr1 (1-196)||(45993338-45993533)
chr1 (1-173)||(3300974-3301146)
chr1 (1-196)||(45983558-45983747)
chr1 (18-173)||(38137729-38137884)
chr1 (25-173)||(7890913-7891061)
chr1 (25-173)||(7888648-7888796)
chr1 (84-170)||(43076660-43076746)
[»] chr8 (4 HSPs)
chr8 (25-173)||(1846660-1846808)
chr8 (126-196)||(4787356-4787426)
chr8 (126-196)||(4620059-4620129)
chr8 (127-196)||(4297843-4297912)
[»] chr6 (1 HSPs)
chr6 (18-169)||(7519592-7519743)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 33861080 - 33861279
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33861080 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 33861179  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33861180 gcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaatgacagtgtaccggtactggtttgtctcaaaatta 33861279  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 16349406 - 16349581
Alignment:
Q  24 gcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccat 123  Q
    |||||||||||| ||||||| |  || |||| |||  || |||||||| |||||| ||||||||||||||||||||| |||||||| | ||||||||||     
T  16349406 gcatgttcacggatctgaccattattggaaataccggctccaaaaccagcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtcccag 16349505  T
Q  124 taatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaaatt 199  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||| |||| |  |||||| | |||||||||||||    
T  16349506 taatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt 16349581  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 4231711 - 4231883
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| | || || || ||||||||||| |||||||| | ||| |||| |||| |||||||||||||||  | |||||||| ||| |||| |||    
T  4231711 caccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaaaccaccagtggtggaatcaatgatgagaacagc 4231810  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtg 173  Q
     |||||||| | |||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4231811 acaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtg 4231883  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43045238 - 43045433
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  ||||||||||||||| || |||||||| ||| ||||  ||    
T  43045238 caccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggc 43045337  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
     |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||||| | ||||||||||    
T  43045338 acaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa 43045433  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43045691 - 43045886
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  ||||||||||||||| || |||||||| ||| ||||  ||    
T  43045691 caccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggc 43045790  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
     |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||||| | ||||||||||    
T  43045791 acaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa 43045886  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 43066716 - 43066521
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  ||||||||||||||| || |||||||| ||| ||||  ||    
T  43066716 caccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggc 43066617  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
     |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||||| | ||||||||||    
T  43066616 acaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa 43066521  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43084119 - 43084314
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| | || || || |||||||||||||||||||| | |||||||| |||  ||||||||||||||| || |||||||| ||| ||||  ||    
T  43084119 caccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaacggc 43084218  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
     |||||||| | |||||| ||  | ||||||||||||||  ||||||||||||| |||||||| ||||||||| | | ||||| | ||||||||||    
T  43084219 acaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa 43084314  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 45993533 - 45993338
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| |||| ||||| ||||||||||| |||||||| | ||| |||| |||  |||||||||||| || || |||||||| ||| |||| |||    
T  45993533 caccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttcaaaaccacgagtagtggaatcaatgatgagaacagc 45993434  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
     |||||||| | ||| |||||  | ||||||||||||||  ||||||||||||| | |||||||||||||||| |   ||||| ||||||||||||    
T  45993433 acaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaa 45993338  T

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Target: chr1; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 3300974 - 3301146
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| | || ||||| || |||||||||||||| || | ||| || | |||  ||||||||||||| | || |||||||| ||| |||| |||    
T  3300974 caccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagc 3301073  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtg 173  Q
     |||||||| | |||||| ||| ||||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  3301074 acaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtg 3301146  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 45983747 - 45983558
Alignment:
Q  1 caccaagagtgcaggcgagaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagc 100  Q
    ||||||||||| |||| ||||| |||||||||||||||||||| | | ||      ||  ||||||||||||||| || |||||||| ||  |||| |||    
T  45983747 caccaagagtgaaggcaagaagagcatgttcacgggtctgaccattcata------ccggcttcaaaaccaccagtagtggaatcaatgacgagaacagc 45983654  T
Q  101 gcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
     || ||||| | ||| || ||  | ||||||||||||||  ||||||||||||| |||||||||||||||||| | | ||||| ||||||||||||    
T  45983653 acagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaa 45983558  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 38137884 - 38137729
Alignment:
Q  18 agaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatg 117  Q
    ||||| |||||||||  ||||||||||| || |||| ||||| ||||||||| |||||  | |||||||| ||  |||| ||| || ||||| | ||| |    
T  38137884 agaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacg 38137785  T
Q  118 tcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtg 173  Q
    ||||  ||||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  38137784 tcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtg 38137729  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 7891061 - 7890913
Alignment:
Q  25 catgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccatt 124  Q
    ||||||||  ||||||||| | |||| |||||||| | |||||||||||| | |  ||||||| |||||||| ||| || ||||| | ||| |  ||| |    
T  7891061 catgttcagtggtctgaccattcttacaaaaaccagcgtcaaaaccaccaagtgtagaatcaatgataagaacagcacagtcagcttcggacgctccagt 7890962  T
Q  125 aatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtg 173  Q
     ||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  7890961 gatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtg 7890913  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 7888796 - 7888648
Alignment:
Q  25 catgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccatt 124  Q
    ||||||||  ||||||||| | |||| |||||||  |||||||||||||||  | |||||||| ||| |||| ||| |||||||| |  || | |||  |    
T  7888796 catgttcagtggtctgaccatccttacaaaaaccggcttcaaaaccaccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggt 7888697  T
Q  125 aatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtg 173  Q
     ||||||||||| ||  ||||||||||||| ||||||||||||| ||||    
T  7888696 gatcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtg 7888648  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 43076746 - 43076660
Alignment:
Q  84 tcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgaca 170  Q
    |||| |||||||||||| |||||||| | ||| |||||| | ||||||||||||||  ||| | ||||||| ||| |||||||||||    
T  43076746 tcaaggataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgaca 43076660  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 1846660 - 1846808
Alignment:
Q  25 catgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccatt 124  Q
    ||||||||  ||||||||| | |||| |||||||| |||||||||||||||| |  || |||| ||||||||  || || ||||| | |||||  ||  |    
T  1846660 catgttcattggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggt 1846759  T
Q  125 aatcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtg 173  Q
     ||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  1846760 gatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtg 1846808  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 4787426 - 4787356
Alignment:
Q  126 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
    ||||||||| |||| || ||||||||||| || ||||||||||||||| | | ||||| ||||||||||||    
T  4787426 atcatgttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaa 4787356  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 4620059 - 4620129
Alignment:
Q  126 atcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
    ||||||||||||||  |||| |||||||| ||||||||||||| |||| | | ||||| | ||||||||||    
T  4620059 atcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaa 4620129  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 4297843 - 4297912
Alignment:
Q  127 tcatgttcttaatctaatccctgtgtccaggggcatcaatgacagtgtactggtactggtttgtctcaaa 196  Q
    |||||||||||||  | ||||| ||||| ||||||||||||||| || | | ||||| ||||||||||||    
T  4297843 tcatgttcttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaa 4297912  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 7519743 - 7519592
Alignment:
Q  18 agaagggcatgttcacgggtctgaccttgcttagaaaaaccaacttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatg 117  Q
    ||||| ||||| ||||||||||| || | |||||| | |||| |||||||||||||||  | ||| |||| |||||| | ||| |||||||| | ||| |    
T  7519743 agaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataaggacagcacaatcagcctgggagg 7519644  T
Q  118 tcccattaatcatgttcttaatctaatccctgtgtccaggggcatcaatgac 169  Q
    | ||| ||||||||||||| ||  |||| |  ||||| || |||||||||||    
T  7519643 ttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgac 7519592  T

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