View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_4 (Length: 426)
Name: NF8657_low_4
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 46996321 - 46995925
Alignment:
| Q |
19 |
gctacaacacacatctaaatgatgagcacccattgtttaaaactcgtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaattt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46996321 |
gctacaacacacatctaaatgatgagcacccattgtttaaaactcgtttctgaatgctttatcaaaccttatcctccaattgaagactcaaagcaaattt |
46996222 |
T |
|
| Q |
119 |
gctatttagcaccttgggatattgtcatgttgtctgcgaattatatccaaaaggcccttctcttcaaaaaaccaacttcatcactaaaccaacaacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46996221 |
gctatttagcaccttgggatattgtcatgttgtctgcgaattatatccaaaaggcccttctcttcaaaaaaccaacttcatcactaaaccaacagcattt |
46996122 |
T |
|
| Q |
219 |
cattgacaaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46996121 |
cattgacaaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctcattcttac |
46996022 |
T |
|
| Q |
319 |
actgtttttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgtcc |
415 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46996021 |
actgtttttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccaattgatgtcc |
46995925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 64 - 413
Target Start/End: Complemental strand, 46998539 - 46998175
Alignment:
| Q |
64 |
gtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaatttgctatttagcaccttgggatattgtcatgttgtctgcgaattata |
163 |
Q |
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||||||||||| ||||||||||| | | | ||||| ||||||||||| ||||| |||||||||| ||||||||||||| |||||| ||||| | |||| |
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| T |
46998539 |
gtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattagcatgttatctgcatactata |
46998440 |
T |
|
| Q |
164 |
tccaaaaggcccttctcttcaaaaaaccaacttcatca---ctaaaccaacaacatttcattgacaa------------actcaaacactccctttccct |
248 |
Q |
| |
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| ||||||| |||||||||||||||||||| |||||| |||||| ||||||||||||| || || ||| ||||||||||||||||| |
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| T |
46998439 |
ttcaaaagggtcttctcttcaaaaaaccaacatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccct |
46998340 |
T |
|
| Q |
249 |
cacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtccc |
348 |
Q |
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|||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
46998339 |
cacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctc |
46998240 |
T |
|
| Q |
349 |
ggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgt |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
46998239 |
ggagctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacctgttgatgt |
46998175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 64 - 415
Target Start/End: Complemental strand, 46975473 - 46975110
Alignment:
| Q |
64 |
gtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaatttgctatttagcaccttgggatattgtcatgttgtctgcgaattata |
163 |
Q |
| |
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||||||| ||| ||||| ||||||||| | || || |||||||||| ||||| |||||| || ||| ||||||||||| |||||| ||| | | |||| |
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| T |
46975473 |
gtttctgcatgttttattaaaccttatccccctatcaaagactcaaaccaaatatgctatctaacacattgggatattgccatgttatctacacactata |
46975374 |
T |
|
| Q |
164 |
tccaaaaggcccttctcttcaaaaaaccaacttcatcactaaaccaacaacatttcattga------------caaactcaaacactccctttccctcac |
251 |
Q |
| |
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||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||| |
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| T |
46975373 |
tccaaaagggacttctcttcaagaaaccaacatcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcac |
46975274 |
T |
|
| Q |
252 |
acttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcccgga |
351 |
Q |
| |
|
|||||| |||| |||||||| || |||||| |||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
46975273 |
actttttcattattatcccctgtctggtcgtcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcgga |
46975174 |
T |
|
| Q |
352 |
gctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccagttgatgtcc |
415 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
46975173 |
gctagatttattcatgcaactttagatatcaccataaatgatattctctcaccagttgatgtcc |
46975110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 62 - 395
Target Start/End: Complemental strand, 46981465 - 46981117
Alignment:
| Q |
62 |
tcgtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaatttgctatttagcaccttgggatattgtcatgttgtctgcgaatta |
161 |
Q |
| |
|
|||||||| ||| ||||| ||||||||| | |||| |||||||||| ||||| || |||||| ||| ||||||||||| |||||| ||| | |||| |
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| T |
46981465 |
tcgtttcttcatgttttattaaaccttatcccacaatcaaagactcaaatcaaatatgttatttaacacattgggatattgccatgttatctacacatta |
46981366 |
T |
|
| Q |
162 |
tatccaaaaggcccttctcttcaaaaaaccaacttcatca---ctaaaccaacaacatttcattgacaa------------actcaaacactccctttcc |
246 |
Q |
| |
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|| |||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| || || ||| ||||||||||||||| |
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| T |
46981365 |
taaccaaaagggacttatcttcaaaaaaccaacatcatcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttcc |
46981266 |
T |
|
| Q |
247 |
ctcacacttttccatttctatcccctctcaggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtc |
346 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
46981265 |
ctcacgcttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctgattcttacactgttttcgtcgattgcaaaaacagtc |
46981166 |
T |
|
| Q |
347 |
ccggagctaaatttattcatgcaactttagatattaccatcaatgatat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
46981165 |
ccggagctaaatttattcatgcaactttagatatcaccataaatgatat |
46981117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 275 - 415
Target Start/End: Complemental strand, 47002005 - 47001865
Alignment:
| Q |
275 |
caggtcgttttgttactaaaaaatccgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcccggagctaaatttattcatgcaacttt |
374 |
Q |
| |
|
|||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
47002005 |
caggtcttcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaacttt |
47001906 |
T |
|
| Q |
375 |
agatattaccatcaatgatattctctcaccagttgatgtcc |
415 |
Q |
| |
|
|||||| ||| |||||| |||||||||||| |||||||||| |
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|
| T |
47001905 |
agatatcaccgtcaatgttattctctcacctgttgatgtcc |
47001865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 47002133 - 47002008
Alignment:
| Q |
64 |
gtttctgaatgctttatcaaaccttattctccaattgaagactcaaagcaaatttgctatttagcaccttgggatattgtcatgttgtctgcgaattata |
163 |
Q |
| |
|
||||||||||| || |||||||| ||| | ||||| ||||||||||| ||||| |||||||||| |||||||||||||| |||| | ||| | | |||| |
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| T |
47002133 |
gtttctgaatgtttcatcaaaccatatcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattgccatgatatcttcacactata |
47002034 |
T |
|
| Q |
164 |
tccaaaaggcccttctcttcaaaaaa |
189 |
Q |
| |
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||||||||| ||||||||||||||| |
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|
| T |
47002033 |
tccaaaagggacttctcttcaaaaaa |
47002008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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