View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_7 (Length: 402)
Name: NF8657_low_7
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 130 - 383
Target Start/End: Complemental strand, 38332535 - 38332282
Alignment:
| Q |
130 |
aatcaattttacacctaaaatcaattttcttccccgcataaccaagcacacactaacataatatgttataaagcatgcaaaaataataatattctcctaa |
229 |
Q |
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| T |
38332535 |
aatcaattttacacctaaaatcaattttcttccccgcataaccaagcacacactaacataatatgttataaagcatgcaaaaataataatattatcctaa |
38332436 |
T |
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| Q |
230 |
gtggagcttgctaactgcaccacattttttgttgcttaatcccaaaataatattatcctaagtctatactattttttatgattaagaaacataaaaggaa |
329 |
Q |
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| T |
38332435 |
gtggatcttgctaactgcaccacattttttgttgcttaatccctaaataatattatcccaagtctatactattttttatgattaagaaacataaaaggca |
38332336 |
T |
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| Q |
330 |
atgaattgaagaaatacagaccctggcttgacgaagagcatcatgagagtcagg |
383 |
Q |
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| T |
38332335 |
atgaattgaagaaatacagaccctggcttgacgaagagcatcataagagtcagg |
38332282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 38333039 - 38332956
Alignment:
| Q |
18 |
agagaatcacaagcaatgtcagcaaggattt-acaataaacaaccaatgtcggagttccaaacatgaaccaaaaagttcaacca |
100 |
Q |
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| T |
38333039 |
agagaatcacaagcaatgtcagcaaggattttacaataaacaaccaatgtcggagttccaaacatgaaccaaaaagttcaacca |
38332956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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