View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8657_low_8 (Length: 330)
Name: NF8657_low_8
Description: NF8657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8657_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 25377986 - 25377736
Alignment:
| Q |
7 |
cagagagatagagaggtggtttatttaaggtcggtttttggtaattaaagcagaaaggagaagaccgactaggccctaacttcattcaatcttcaagtaa |
106 |
Q |
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| T |
25377986 |
cagagagatagagaggtggtttatttaaggtcggtttt-ggtaattaaagcagaaaggagaagaccgactaggccctaacttcattcaatcttcaagtaa |
25377888 |
T |
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| Q |
107 |
tagaagaattactcgcttgtgacttaaggcggaacaatgaagcttataactattgtagaccaaacatgagtaatcattatactactctaaacagcatgga |
206 |
Q |
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| T |
25377887 |
tagaagaattactcgcttgtgacttaaggcggaacaatgaagcttataactattgtagaccaaacatgagtaatcattatactactctaaacagcatgga |
25377788 |
T |
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| Q |
207 |
ttaatttgatcaccacttcaatttcttcaaacaactatgccaagaagtgtta |
258 |
Q |
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| T |
25377787 |
ttaatttgatcaccacttcaatttcttcaaacaactatgccaagaagtgtta |
25377736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 25377705 - 25377657
Alignment:
| Q |
262 |
gacaaaaacaaagcatgtaaatgagaatgatggatttaatgcagactat |
310 |
Q |
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| T |
25377705 |
gacaaaaacaaagcatgtaaatgagaatgatggatttaatgcagactat |
25377657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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