View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8658_1 (Length: 802)
Name: NF8658_1
Description: NF8658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8658_1 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 456 - 779
Target Start/End: Complemental strand, 40804501 - 40804178
Alignment:
| Q |
456 |
aggaagattcaacaacttggaggtgcatgaaaaagttgtatgaaaatcttgggatgaatcaagcttctttggtacctagtggatgaagaaacaaagatat |
555 |
Q |
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| T |
40804501 |
aggaagattcaacaacttggaggtgcataaaaaagttgtatgaaaatcttgggatgaatcaagcttctttggtacctagtggatgaagaaacaaagatat |
40804402 |
T |
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| Q |
556 |
taaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcacttatctttcctcttaaaa |
655 |
Q |
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| T |
40804401 |
taaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcgcttatctttcctcttaaaa |
40804302 |
T |
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| Q |
656 |
acttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatattaccaattatgtttctct |
755 |
Q |
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| T |
40804301 |
acttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatattaccaattatgtttctct |
40804202 |
T |
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| Q |
756 |
tttgttttaatcccttgatgatgt |
779 |
Q |
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| T |
40804201 |
tttgttttagtcccttgatgatgt |
40804178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 222 - 388
Target Start/End: Complemental strand, 40804735 - 40804569
Alignment:
| Q |
222 |
gttattgttgaaatagacctgctagcataaaatttataaactgtattatgtttggtgtcatatttaacttatatgaatttacgtaatacacatacacaaa |
321 |
Q |
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| T |
40804735 |
gttattgttgaaatagacctgctagcataaaacttataaattgtattatgtttggtgtcatatttaacttatatgaatttacataatacacatacacaaa |
40804636 |
T |
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| Q |
322 |
gagtcttgttcataaggtgtggagtatttgattatattggtttgaactatttcagatatttaaattg |
388 |
Q |
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| T |
40804635 |
gagtcttgttcataaggtgtggagtatttgattatattggtatgaactatttcagatatttaaattg |
40804569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 40804908 - 40804838
Alignment:
| Q |
50 |
aagagttttgaagggacacctctttagtaagtttggtgttacacttgcagtatttgtagagggagctcaac |
120 |
Q |
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| T |
40804908 |
aagagttttgaagggacacctctttagtaagtttggtgttacacttgcagtatttgtagagggagctcaac |
40804838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 620
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
566 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
620 |
Q |
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| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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