View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8658_high_1 (Length: 353)
Name: NF8658_high_1
Description: NF8658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8658_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 2677468 - 2677798
Alignment:
| Q |
1 |
tcgaaacaaccaaatagtagaagacgagataacatgcataattagggattctttaaggactcaatcccttgtcgtaccttgatatgatgtgtgtagagtt |
100 |
Q |
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| T |
2677468 |
tcgaaacaaccaaatagtagaagacgagataacatgcataattagggattctttaaggactcaatcccttgtcgtaccttgatatgatgtgtgtagagtt |
2677567 |
T |
|
| Q |
101 |
tacctattcaatagagaaatttcaaattattcnnnnnnnnnnnnnnnnnnnnnntagagaagtttcaaatgtttcataatcatttagctggatggaaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2677568 |
tacctattcaatagagaaatttcaaattattcaaaaataaaataaaaaa-----tagagaagtttcaaatgtttcataatcatttagctggatggaaagc |
2677662 |
T |
|
| Q |
201 |
tagctattgaatttggctgagcatatattacattgttcgaaccagctatttattgggaagcaaatagatgcgtaaatgtgttggccaaaatggattgtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2677663 |
tagctattgaatttggctgagcatatattacattgttcgaaccagctatttattgggaagcaaatagatgcgtaaatgtgttggccaaaatggattgtat |
2677762 |
T |
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| Q |
301 |
agtagatgtgtactatcaggatttatggtcagatat |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2677763 |
agtagatgtgtactatcaggatttatggtcagatat |
2677798 |
T |
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