View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8658_low_1 (Length: 498)
Name: NF8658_low_1
Description: NF8658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8658_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 62 - 482
Target Start/End: Complemental strand, 880107 - 879687
Alignment:
| Q |
62 |
tttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaattcaaagaggtttgttgcttcttgaaaggaatgaacagag |
161 |
Q |
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| T |
880107 |
tttgtctattttgtgagccttcatgacaaatatatttgcagagaatcattgctaacccaattcaaagaggttttttgcttcttgaaaggaatgaacagag |
880008 |
T |
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| Q |
162 |
catgaatgctgctgatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatatacgcatgagaaatggataaattaaaataaacaga |
261 |
Q |
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| T |
880007 |
catgaatgctgctgatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatatacgcatgagaaatggataaattaaaataaacaga |
879908 |
T |
|
| Q |
262 |
aagggcatcatcaagaaattctatcccggttgagttgaatgaataatgttgtacatcgactagttcagaggttagaccgagtgtatccttttcattatta |
361 |
Q |
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| T |
879907 |
aagggcatcatcaagaaattctatcccggttgagttgaatgaataatgttgtacatcgactagttcagaggttagaccgagtgtatccttttcattatta |
879808 |
T |
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| Q |
362 |
taacagcaagaccaggtcatactattatttagtcttgtgattcttctttttgcagaacttaaaatggtaaatgtagcaagcaagtgttcgatggccggcc |
461 |
Q |
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| T |
879807 |
taacagcaagaccaggtcatactattatttagtcttgtgattcttctctttgcagaacttaaaatggtaaatgtagcaagcaagtgttcgatggccggcc |
879708 |
T |
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| Q |
462 |
attgttaagttaacaaacatt |
482 |
Q |
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| T |
879707 |
attgttaagttaacaaacatt |
879687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 344 - 482
Target Start/End: Original strand, 1161408 - 1161548
Alignment:
| Q |
344 |
gtatccttttcattattataacagcaagacc---aggtcatactattatttagtcttgtgattcttctttttgcagaacttaaaatggtaaatgtagcaa |
440 |
Q |
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| T |
1161408 |
gtatccttttcattattttaacagcaagacctacaggtcatactattatt-agtcttgtgattcttctctttgcagaacttaaaatggtaagtgtagcaa |
1161506 |
T |
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| Q |
441 |
gcaagtgttcgatggccggccattgttaagttaacaaacatt |
482 |
Q |
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| T |
1161507 |
gcaactgttcgatgtccggccattgttaagttaacaatcatt |
1161548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 1161220 - 1161308
Alignment:
| Q |
59 |
gcttttgtctattttttgagcgcacatgacaaacatatttgcagagaatcattgctaacccaattcaaagaggtttgttgcttcttgaa |
147 |
Q |
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| T |
1161220 |
gcttttgtctattttttgagcgtacatgacaaacatatttgcagagaatcattgctaacccaactcaaggaggttttgtgtttcttgaa |
1161308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 1161309 - 1161362
Alignment:
| Q |
175 |
gatgcatgtcagcagaatgatgcatcttgtatacttaggtactcatcttatata |
228 |
Q |
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| T |
1161309 |
gatgcatgtaagctgaatgatgcatcttgtatacttagatactcatcttatata |
1161362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 320
Target Start/End: Original strand, 1161365 - 1161399
Alignment:
| Q |
286 |
cccggttgagttgaatgaataatgttgtacatcga |
320 |
Q |
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| T |
1161365 |
cccggttgagttgaatgaataatgttgtacatcga |
1161399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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