View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8659_high_1 (Length: 464)

Name: NF8659_high_1
Description: NF8659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8659_high_1
NF8659_high_1
[»] chr1 (1 HSPs)
chr1 (17-388)||(28441036-28441400)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 28441036 - 28441400
Alignment:
Q  17 aattggttataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatgnnnnnnnnnnnnnnnnnnnnnncatgataaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||    
T  28441036 aattggttataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatgaaaaaaaaatcaaaatcaaaa-catgataaaca 28441134  T
Q  117 agaactactgaactatattacacaagtgaaagagaaagaacaagacataattatagtaccgttgttgatgttgttattttcagtatcccatgatgagaaa 216  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28441135 agaactactgaactatattacacaagtgaaaga------acaagacataattatagtaccgttgttgatgttgttattttcagtatcccatgatgagaaa 28441228  T
Q  217 caagcgaaaagtgagaatttcatagcttaagnnnnnnnn--gaataaaagattaatttggttggttaaggaatttgggtgtataatatatatgaagagaa 314  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  28441229 caagcgaaaagtgagaatttcatagcttaagaaaaaaaaaagaataaaagattaatttggttggttaaggaatttgggtgtataatat--atgaagagaa 28441326  T
Q  315 tgagagaaaaaggacatgtttgaaggaacagataaagaagaaaacacggtctaaaggcttgtgtgtactaaatt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28441327 tgagagaaaaaggacatgtttgaaggaacagataaagaagaaaacacggtctaaaggcttgtgtgtactaaatt 28441400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University