View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8659_low_10 (Length: 312)
Name: NF8659_low_10
Description: NF8659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8659_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 48126233 - 48126499
Alignment:
| Q |
11 |
cagagagactctgattaaaaatctgagtggtgaaaattgtataaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48126233 |
cagagagactctgattaaaaatctgagtggtgaaaattgtataaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaata |
48126332 |
T |
|
| Q |
111 |
acggagttgtgttatgaaacgtctccaacaagccatgtgacagtgtgttgagtcctctgagtgagtgagtgagtatgaacttcttcttctcttcctaaca |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48126333 |
acggagttttgttatgaaacgtctccaacaagccatgtgacagtgtgttgagtcctc----tgagtgagtgagtatgaacttcttcttctcttcctaaca |
48126428 |
T |
|
| Q |
211 |
tgaatgattctctcactctccacatcgaattctcctataaccgaattctactctaactaacaaattcactg |
281 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48126429 |
tgaatgattttctcactctccacatcgaattctcctataaccgaattctactctaactaacaaattcactg |
48126499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 48138639 - 48138534
Alignment:
| Q |
40 |
gtgaaaattgtataaaggaa-tgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaa |
138 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || |||||||| || |||||| |
|
|
| T |
48138639 |
gtgaaaattgtataaaggaaatgagtaataataata---actaacctgccatggagattgatgggttgaataacggaggtgcgttatgaatcgcctccaa |
48138543 |
T |
|
| Q |
139 |
caagccatg |
147 |
Q |
| |
|
||||||||| |
|
|
| T |
48138542 |
caagccatg |
48138534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 25251314 - 25251209
Alignment:
| Q |
40 |
gtgaaaattgtataaaggaa-tgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaa |
138 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| || ||||||| || |||||| |
|
|
| T |
25251314 |
gtgaaaattgtataaaggaaatgagtaataataata---actaacctgccatggagattgatgggttgaataacggaggtgcattatgaatcgcctccaa |
25251218 |
T |
|
| Q |
139 |
caagccatg |
147 |
Q |
| |
|
||||||||| |
|
|
| T |
25251217 |
caagccatg |
25251209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University