View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8659_low_13 (Length: 219)
Name: NF8659_low_13
Description: NF8659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8659_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 36196598 - 36196781
Alignment:
| Q |
17 |
agacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttag |
116 |
Q |
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| T |
36196598 |
agacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttag |
36196697 |
T |
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| Q |
117 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttat |
200 |
Q |
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| T |
36196698 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttat |
36196781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 36188285 - 36188463
Alignment:
| Q |
21 |
gaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttagttca |
120 |
Q |
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| T |
36188285 |
gaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttagttca |
36188383 |
T |
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| Q |
121 |
tctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttat |
200 |
Q |
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| T |
36188384 |
tctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttat |
36188463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 36209726 - 36209902
Alignment:
| Q |
21 |
gaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatcttagttca |
120 |
Q |
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| T |
36209726 |
gaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatcttagttca |
36209825 |
T |
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| Q |
121 |
tctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
198 |
Q |
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| T |
36209826 |
tctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgactt |
36209902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
117 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
198 |
Q |
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| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 36207688 - 36207806
Alignment:
| Q |
80 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
178 |
Q |
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| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
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| Q |
179 |
cgatgtgcatgtttggactt |
198 |
Q |
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| T |
36207787 |
tgatgtgcatgtttggactt |
36207806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 36200857 - 36200944
Alignment:
| Q |
105 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
193 |
Q |
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| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttg |
36200944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 36214722 - 36214813
Alignment:
| Q |
106 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
198 |
Q |
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| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggactt |
36214813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 36184500 - 36184622
Alignment:
| Q |
80 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
174 |
Q |
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| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
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| Q |
175 |
caaacgatgtgcatgtttggactt |
198 |
Q |
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| T |
36184599 |
cgtatgatattcatgtttggactt |
36184622 |
T |
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