View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8659_low_2 (Length: 464)
Name: NF8659_low_2
Description: NF8659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8659_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 28441036 - 28441400
Alignment:
| Q |
17 |
aattggttataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatgnnnnnnnnnnnnnnnnnnnnnncatgataaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28441036 |
aattggttataagtgaatacacgaaaacttccatcattaatatctccctcagcataatctgcatatgaaaaaaaaatcaaaatcaaaa-catgataaaca |
28441134 |
T |
|
| Q |
117 |
agaactactgaactatattacacaagtgaaagagaaagaacaagacataattatagtaccgttgttgatgttgttattttcagtatcccatgatgagaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28441135 |
agaactactgaactatattacacaagtgaaaga------acaagacataattatagtaccgttgttgatgttgttattttcagtatcccatgatgagaaa |
28441228 |
T |
|
| Q |
217 |
caagcgaaaagtgagaatttcatagcttaagnnnnnnnn--gaataaaagattaatttggttggttaaggaatttgggtgtataatatatatgaagagaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28441229 |
caagcgaaaagtgagaatttcatagcttaagaaaaaaaaaagaataaaagattaatttggttggttaaggaatttgggtgtataatat--atgaagagaa |
28441326 |
T |
|
| Q |
315 |
tgagagaaaaaggacatgtttgaaggaacagataaagaagaaaacacggtctaaaggcttgtgtgtactaaatt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28441327 |
tgagagaaaaaggacatgtttgaaggaacagataaagaagaaaacacggtctaaaggcttgtgtgtactaaatt |
28441400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University