View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8659_low_4 (Length: 375)
Name: NF8659_low_4
Description: NF8659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8659_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 2895796 - 2896154
Alignment:
| Q |
1 |
tcgtgacgcggagaaaggagatgaagattggaatgagtttaatgacattcacaaacttattataaggtcgaaacttaggactgagtataggattgctttt |
100 |
Q |
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| T |
2895796 |
tcgtgacgcggagaaaggagatgaagattggaatgagtttaatgacattcacaaacttattataaggtcaaaacttaggactgagtataggattgctttt |
2895895 |
T |
|
| Q |
101 |
ccgtatctttataacgataggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgtatgtgaaggctgatgatcctgatttacctgcat |
200 |
Q |
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| T |
2895896 |
ccgcatctttataacgataggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgtatgtgaaggctgatgatcctgatttacctgcat |
2895995 |
T |
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| Q |
201 |
tttattatgatcccttgatacacccgatagctggtgctggtaacaaagagcggtgcgagatggaaatctgcactgaggatgatgatgactggattttgcc |
300 |
Q |
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| T |
2895996 |
tttattatgatcccttgatacacccgatagctggtgctggtaacaaagagcggtgcgagatggaaatctgcaatgaggatgatgatgactggattttgcc |
2896095 |
T |
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| Q |
301 |
tgatggtgtggaaccttttctcaaagatgtggagctttatactgacactaccactgatg |
359 |
Q |
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| T |
2896096 |
tgatggtgtggaaccttttctcaaagatgtggagctttataccgacactaccactgatg |
2896154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 44784937 - 44784722
Alignment:
| Q |
10 |
ggagaaaggagatgaagattggaatgagtttaatgacattcacaaacttattataaggtcgaaacttaggactgagtataggattgcttttccgtatctt |
109 |
Q |
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| T |
44784937 |
ggagaaaggagatgaagactggaacgagtttaatgacatcaacaaactcattataaggtctccacttcggacagaatatagaatcgcctttccccatctt |
44784838 |
T |
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| Q |
110 |
tataacgataggccgaggaaagtaaggcttggtgtttaccatactcccatggttgtgtatgtgaaggctgatgatcctgatttacctgcattttattatg |
209 |
Q |
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| T |
44784837 |
tataacaacaggcctcgtaaagtaaggctttgtatttaccatacacccatggttatgtacataaaaactgaagatcccgatctacctgcattttattatg |
44784738 |
T |
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| Q |
210 |
atcccttgatacaccc |
225 |
Q |
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| T |
44784737 |
atcccttgatacaccc |
44784722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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