View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8659_low_8 (Length: 339)
Name: NF8659_low_8
Description: NF8659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8659_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 4620886 - 4620745
Alignment:
| Q |
192 |
ggaaccaatctgctcctctctacaatatttctcttccttccagggcaagctttctttttcttcaatttcgtatcgtcccgactcgtaagcgattgtatgt |
291 |
Q |
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| T |
4620886 |
ggaaccaatctgctcctctctacaatctttctcttccttccagggcaagctttctttttcttcaatttcgtatcgtcccgactcgtaagcgattgtatgt |
4620787 |
T |
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| Q |
292 |
atatgatcgttagatattgttttgtttctttgttctctgctc |
333 |
Q |
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| T |
4620786 |
atatgatcgttagatattgttttgtttctttgttttctgctc |
4620745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 2587760 - 2587854
Alignment:
| Q |
17 |
aagaataattacctgattgatctgaaagaaactactactaaaacacagagagagagttatcactccatttttctgtgtgtaaccctcctcacatc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2587760 |
aagaataattacctgattgatctgaaagaaactactactaaaacacagagagagagttatcactccatttttctgtgtgtaaccctcctcacatc |
2587854 |
T |
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