View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8660_high_2 (Length: 442)
Name: NF8660_high_2
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8660_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 4 - 442
Target Start/End: Original strand, 36603856 - 36604293
Alignment:
| Q |
4 |
tgtgatcactggatcgagatcagacgatatatattttgatgtagactattttattttaaaataaaaaatatcgatcttgaagtttagatcatttgatctt |
103 |
Q |
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| T |
36603856 |
tgtgattactggatcgagatcagacgatatagattttgatgtagactattttatttgaaa-taaaaaatattgatcttgaagtttagatcatttgatctt |
36603954 |
T |
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| Q |
104 |
catcgaacaatcacatatgtgctaattgcataaatgcatcaaattgcgggccgcagacaattctgattcgaatatttggtagtgggacaaacctgtgcca |
203 |
Q |
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| T |
36603955 |
catctaacgatcacatatgtgctaattgcataaatgcgtcaaattgtgggccgcagacaattctgatttgaatatttggtagtgtgacaaacctgtgcca |
36604054 |
T |
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| Q |
204 |
tgaacatggttctaggagggattttcatgtagtggcctagtttgaagtcttgcaagaaagtgatggcttgtgtcatactaatgtaaccataaaccttgaa |
303 |
Q |
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| T |
36604055 |
tgaacatggttctaggagggattttcatgtagtggcctagtttgaagtcttgcaagaaagtgatggcttgtgtcatactaatgtaaccataaaccttgaa |
36604154 |
T |
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| Q |
304 |
gcacatgttagctacaggatatccagggtagatatatcctatgatgtactccgtgattatgttcagccctggactctataattagaaattaagccaatga |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36604155 |
gcacatgttagctacaggatatccagggtagatatatcctatgatgtactccgtgattatgttcagccctggactctataattagaaattaagccaacga |
36604254 |
T |
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| Q |
404 |
aaaaattaattatctctaatttatgtcactaaattaatt |
442 |
Q |
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| T |
36604255 |
aaaaattaattatctctaatttatgtcactaaattaatt |
36604293 |
T |
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