View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8660_high_3 (Length: 302)

Name: NF8660_high_3
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8660_high_3
NF8660_high_3
[»] chr2 (5 HSPs)
chr2 (17-291)||(8146583-8146857)
chr2 (18-92)||(4058074-4058148)
chr2 (185-291)||(30545363-30545469)
chr2 (227-291)||(44154333-44154397)
chr2 (228-284)||(17947871-17947927)
[»] chr7 (2 HSPs)
chr7 (18-80)||(26245446-26245508)
chr7 (169-218)||(9096-9145)
[»] chr4 (5 HSPs)
chr4 (17-72)||(56418105-56418160)
chr4 (227-285)||(33464504-33464562)
chr4 (171-218)||(48569406-48569453)
chr4 (228-284)||(32894635-32894691)
chr4 (228-284)||(49347148-49347204)
[»] chr1 (2 HSPs)
chr1 (171-285)||(49420084-49420198)
chr1 (228-285)||(51051239-51051296)
[»] chr8 (2 HSPs)
chr8 (234-285)||(35840464-35840515)
chr8 (24-68)||(42914997-42915041)
[»] chr6 (1 HSPs)
chr6 (231-285)||(29647386-29647440)
[»] chr5 (1 HSPs)
chr5 (227-285)||(6006790-6006848)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 8146857 - 8146583
Alignment:
Q  17 agaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttctgcaacataaattctagatctggnnnnnnnnnngtgtgtattca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          |||||||||||    
T  8146857 agaagagtaatcaaataatttaagataatatgatttatgctctcctccgatagttctgcaacataaattctagatctggaaaaaaaaa-gtgtgtattca 8146759  T
Q  117 tggagttcaacagaaaagaggggtaattgcaggaa-gtatatatgttgaagataaggtgaggttcaacatgggaaagggaagttgtttttcatgatggga 215  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  8146758 tggagttcaacagaaaagaggggtaattgcaggaaagtatatatgttgaagataaggtgaagtttaacatgggaaagggaagttgttttccatgatggga 8146659  T
Q  216 aagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttcctctct 291  Q
    |||        |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  8146658 aagttttttttaaccattagattaaagaggtgcatacattttatgatggtttgtccacaccatatatttcccctct 8146583  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 4058148 - 4058074
Alignment:
Q  18 gaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttctgcaacataaattctagatc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  4058148 gaagagtaatcaaataatttaagataatatgatttatgctctcctatgatagttctgcaacatgaattatagatc 4058074  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 185 - 291
Target Start/End: Complemental strand, 30545469 - 30545363
Alignment:
Q  185 tgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 284  Q
    |||||||||||||||||||  |||||||||||||        ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  30545469 tgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttatgatggtttgtccacaccatatattt 30545370  T
Q  285 cctctct 291  Q
    || ||||    
T  30545369 cccctct 30545363  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 44154333 - 44154397
Alignment:
Q  227 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttcctctct 291  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  44154333 aaccattaaattaaagaggtgcacacattttatgatggtttgtccacaccatatatttcccctct 44154397  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 17947927 - 17947871
Alignment:
Q  228 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 284  Q
    ||||| |||||||||||||||||| ||||||  ||||  ||||||||||||||||||    
T  17947927 accataagattaaagaggtgcatagattttaaaatggtctgtccacaccatatattt 17947871  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 26245508 - 26245446
Alignment:
Q  18 gaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttctgcaacat 80  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  26245508 gaagagcaatcaaataatttaagataatatgatttatgctctcctatgatagttttgcaacat 26245446  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 9145 - 9096
Alignment:
Q  169 aaggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaag 218  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||||||||    
T  9145 aaggtgaggtttagtatgggaaagggaagtagtttttcatgatgggaaag 9096  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 56418105 - 56418160
Alignment:
Q  17 agaagagtaatcaaataatttaagataatatgatttatgctctcctctgatagttc 72  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  56418105 agaagaataatcaaataatttaagataatatgatttatgctctcctgtgatagttc 56418160  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 33464562 - 33464504
Alignment:
Q  227 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 285  Q
    ||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||    
T  33464562 aaccattagattaaaaaggtgcacacattttatgatggtttctccacaccatatatttc 33464504  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 48569406 - 48569453
Alignment:
Q  171 ggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaag 218  Q
    ||||||||| ||||||| |||||||||||||||  |||||||||||||    
T  48569406 ggtgaggtttaacatggaaaagggaagttgtttcccatgatgggaaag 48569453  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 32894691 - 32894635
Alignment:
Q  228 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 284  Q
    ||||| |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  32894691 accataagattaaagaggtgcacagattttaaaatggtctgtccacaccatatattt 32894635  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 49347204 - 49347148
Alignment:
Q  228 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatattt 284  Q
    ||||| |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  49347204 accataagattaaagaggtgcacagattttaaaatggtctgtccacaccatatattt 49347148  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 49420084 - 49420198
Alignment:
Q  171 ggtgaggttcaacatgggaaagggaagttgtttttcatgatgggaaagnnnnnnnnaaccattagattaaagaggtgcatacattttatgatgggttgtc 270  Q
    ||||||||| |  |||||||||| |||||||||  |||||||||||||         |||||||||||||| ||||||| ||||||||||||||  ||||    
T  49420084 ggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagattaaataggtgcacacattttatgatggtctgtc 49420183  T
Q  271 cacaccatatatttc 285  Q
    |||||||||||||||    
T  49420184 cacaccatatatttc 49420198  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 51051296 - 51051239
Alignment:
Q  228 accattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 285  Q
    |||||||||||||||||||||| ||||||||||||||  ||||  |||||||||||||    
T  51051296 accattagattaaagaggtgcacacattttatgatggtatgtctgcaccatatatttc 51051239  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 35840515 - 35840464
Alignment:
Q  234 agattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 285  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  35840515 agattaaagaggtgcacacattttatgatggtctgtccacaccatatatttc 35840464  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 42915041 - 42914997
Alignment:
Q  24 taatcaaataatttaagataatatgatttatgctctcctctgata 68  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  42915041 taatcaaataatttaagatgatatgatttatgctctcctatgata 42914997  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 285
Target Start/End: Original strand, 29647386 - 29647440
Alignment:
Q  231 attagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 285  Q
    ||||||||||||||||||| | |||||||||||| || |||||||||||||||||    
T  29647386 attagattaaagaggtgcacatattttatgatggtttctccacaccatatatttc 29647440  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 6006790 - 6006848
Alignment:
Q  227 aaccattagattaaagaggtgcatacattttatgatgggttgtccacaccatatatttc 285  Q
    ||||||||||||||| ||||||| |||||||||||||| || |||| ||||||||||||    
T  6006790 aaccattagattaaaaaggtgcacacattttatgatggtttctccagaccatatatttc 6006848  T

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