View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8660_low_1 (Length: 713)

Name: NF8660_low_1
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8660_low_1
NF8660_low_1
[»] chr4 (4 HSPs)
chr4 (17-702)||(53673795-53674480)
chr4 (20-314)||(53671144-53671451)
chr4 (21-113)||(54305031-54305123)
chr4 (352-476)||(53671717-53671842)


Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 17 - 702
Target Start/End: Original strand, 53673795 - 53674480
Alignment:
Q  17 aaaaacattgagagttgagggtacaaggcttacttaccataaccatgcaatgcagttgacaagtttccattttgagagtaattgaaaatcagataaagac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53673795 aaaaacattgagagttgagggtacaaggcttacttaccataaccatgcaatgcagttgacaagtttccattttgagagtaattgaaaatcagataaagcc 53673894  T
Q  117 cattttcaaagcagtagcccaataaagatgcagtattaggatgacaaacatgtccaataatacccaactccataaggaattctttttccttgtttggatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53673895 cattttcaaagcagtagcccaataaagatgcagtattaggatgacaaacatgtccaataatacccaactccataaggaattctttttccttgtttggatc 53673994  T
Q  217 tttgttgtctttggctaatctcttcacagcaatggtttttccattacaaagatcacctttgtatacctctgagtaccctcctcttccaactaaattatct 316  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53673995 tttgttgtctttggctaatctcttcacagcaatggtttctccattacaaagatcacctttgtatacttctgagtaccctcctcttccaactaaattatct 53674094  T
Q  317 attttcaaagaaaccaaaaatgaatgagtatattagaaacctcaattcaatgtttcatatgacattaaaaataagattaattatataccttggtgaaagt 416  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  53674095 attttcaaagaaacaaaaaatgaatgagtatattagaaacctcaattcaatgtttcatatgacattaaaaataacattaataatataccttggtgaaagt 53674194  T
Q  417 cattagtagcatttgatatattttcatagctgaagcacttcaacaagggttgatgtttttcaattttggacatgttgaaggtttttattctgaatggtga 516  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53674195 cattagtagcatttgatatattttcatagctgaagcaattcaacaagggttgatgtttttcaattttggacatgttgaaggtttttattctgaatggtga 53674294  T
Q  517 accaagaaacgaaattatgaacctgaatgataattgtgattttctcttaatcttaggaccagatgaaggtgtatatgtcatgcttgatgctctagtgcta 616  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53674295 accaagaaacgatattatgaacctgaatgataattgtgattttctcttaatcttaggaccagatgaaggtgtatatgtcaagcttgatgctctagtgcta 53674394  T
Q  617 aatgtgtcatcttctgtgctgttggattgtccctctagtagtccatctagaagtactgttctaggtgaactgttctgttgattcat 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53674395 aatgtgtcatcttctgtgctgttggattgtccctctagtagtccatctagaagtactgttctaggtgaactgttctgttgattcat 53674480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 53671144 - 53671451
Alignment:
Q  20 aacattgagagttgagggtacaaggcttacttaccataaccatgcaatgcagttgacaagtttccattttgagagtaattgaaaatcagataaagaccat 119  Q
    |||||||  ||| ||| ||||||||||| || ||  ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||||    
T  53671144 aacattggaagtggagagtacaaggctttctcactgtaaccatgcaatgaagttgactactttccattttgagagtaattgaaaatcagataaaggccat 53671243  T
Q  120 tttcaaagcagtagcccaataaagatgcagtattaggatgacaaacatgtccaataatacccaactccataagga--------attctttttccttgttt 211  Q
    |||||| ||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||        | |||||||||||||||    
T  53671244 tttcaatgcagtagcctaataaagatgcagtattagtttgacaaacatgtccaataatacccaactccataaggaactcatttagtctttttccttgttt 53671343  T
Q  212 ggatctttgttgtctttggctaatctcttcacagcaatggtttttccattacaaagatcacctttgtatacctctgagta-----ccctcctcttccaac 306  Q
    |||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||||| |||||||  ||||||||     |||||||||||||||    
T  53671344 ggatctttgttgtcttaggctaacctcttcacaacaatggtttctccattacaaagatcaccattgtataattctgagtaacctcccctcctcttccaac 53671443  T
Q  307 taaattat 314  Q
     |||||||    
T  53671444 caaattat 53671451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 54305123 - 54305031
Alignment:
Q  21 acattgagagttgagggtacaaggcttacttaccataaccatgcaatgcagttgacaagtttccattttgagagtaattgaaaatcagataaa 113  Q
    |||||| ||||||| |||| |||||||  | ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  54305123 acattgggagttgaaggtaaaaggcttcttcaccatgaccatgcaatgcagttgacaagcttccattttgagtgtaattgaaaatcagataaa 54305031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 476
Target Start/End: Original strand, 53671717 - 53671842
Alignment:
Q  352 gaaacctcaattcaatgtttcatatgacatt-aaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaa 450  Q
    ||||| ||||||||||||||  || ||| || |||||||| | | || ||| |||||||||| ||| ||| | |||||| || ||||||||| |||||||    
T  53671717 gaaacatcaattcaatgttttctacgaccttgaaaaataacactgatcataaaccttggtgacagtgatttgcagcattggaaatattttcacagctgaa 53671816  T
Q  451 gcacttcaacaagggttgatgttttt 476  Q
    |||||  | ||| |||||||| ||||    
T  53671817 gcactatagcaaaggttgatgctttt 53671842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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