View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8660_low_11 (Length: 202)
Name: NF8660_low_11
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8660_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 32929765 - 32929918
Alignment:
| Q |
17 |
atctataataaattgagggtttttatataaattacttgccaaacaagtttaataaatgttaggtaaactaacatgattttgacacttatcaaccttacaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32929765 |
atctataataaattgagggtttttatataaattacttgccaaacaagtttaataaatgttatgtaaactaacatgattttgacacttatcaaccttacaa |
32929864 |
T |
|
| Q |
117 |
atccgttttgtaaagataagttaaggccaatttaaaaacataatatgctatctt |
170 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32929865 |
atccattttgtaaagataagtcaaggccaatttaaaaatataatatgctatctt |
32929918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 3472551 - 3472468
Alignment:
| Q |
23 |
aataaattgagggtttttatataaattacttgccaaacaagtttaataaatgttaggtaaactaacatgattttgacacttatca |
107 |
Q |
| |
|
||||| ||||| ||||||| |||||||| ||| ||||||||| || || || || | ||| ||||||||||||||||||||||| |
|
|
| T |
3472551 |
aataatttgagagtttttacctaaattacatgcaaaacaagtt-aacaagtgctatgaaaattaacatgattttgacacttatca |
3472468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University