View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8660_low_2 (Length: 476)
Name: NF8660_low_2
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8660_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 172 - 440
Target Start/End: Complemental strand, 45512530 - 45512262
Alignment:
| Q |
172 |
attcatgagatcaagcttggtaacatgtccagtaacattgtcacaaccaatgccttcccattgacaacattgagtgcctttccatgatgaaagcttgttt |
271 |
Q |
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| T |
45512530 |
attcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgttt |
45512431 |
T |
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| Q |
272 |
ggtgaatcttttgcaatggatgctttgaaatcgagaagggcttgcctctctttttcaacgcaggggatgtttgaatttacacacaagcatatttgtgcaa |
371 |
Q |
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| T |
45512430 |
ggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaa |
45512331 |
T |
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| Q |
372 |
tttcaatcaacaccaaaagcactacacgtttgtaatatcttcccatgctttctctctgtgtttctattg |
440 |
Q |
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| T |
45512330 |
tttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattg |
45512262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 45512751 - 45512625
Alignment:
| Q |
18 |
agatgctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttccagacaagtccaaat-agtcaagtgttccaattgca |
116 |
Q |
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| T |
45512751 |
agatactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgca |
45512652 |
T |
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| Q |
117 |
acaaagatgaactgacatttggagcaa |
143 |
Q |
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| T |
45512651 |
acaaagatgagctcacatttggagcaa |
45512625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 22848808 - 22848917
Alignment:
| Q |
18 |
agatgctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttccagacaagtccaaat-agtcaagtgttccaattgca |
116 |
Q |
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|||| |||||| | |||||||||||| | |||||| |||||||||||| | ||||||| |||||| ||||||||||| |||||||| |||||| |||| |
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| T |
22848808 |
agatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagtattccaagtgca |
22848907 |
T |
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| Q |
117 |
acaaagatga |
126 |
Q |
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|||||||||| |
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| T |
22848908 |
acaaagatga |
22848917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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