View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8660_low_6 (Length: 250)
Name: NF8660_low_6
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8660_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5318923 - 5319166
Alignment:
| Q |
1 |
tgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactc |
100 |
Q |
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| T |
5318923 |
tgcaaagcagaacatatctcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactc |
5319022 |
T |
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| Q |
101 |
tttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaag |
200 |
Q |
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| T |
5319023 |
tttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaag |
5319122 |
T |
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| Q |
201 |
tccacctactccacctccatgaccaattttattagtattatcta |
244 |
Q |
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| T |
5319123 |
tccacctactccacctccatgaccaattttattattattatcta |
5319166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 3637476 - 3637706
Alignment:
| Q |
4 |
aaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactcttt |
103 |
Q |
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| T |
3637476 |
aaagctgaacacacttcgtctgccagacgctgaggctcttgaagtcgtttagcaaatacttcggcgacacgagagagcttgcttaatccaacaactcttt |
3637575 |
T |
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| Q |
104 |
ggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtcc |
203 |
Q |
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| T |
3637576 |
ggccagaagggacgtaaccgacatgacatttgacttggaaaggtagcaaacaagattcacagtaggaatagaggtcaatgtctcggacaatcacaagtcc |
3637675 |
T |
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| Q |
204 |
acctactccacctccatgaccaattttatta |
234 |
Q |
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| T |
3637676 |
gcctgcaccaccagcatgaccgattttatta |
3637706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 19100769 - 19100555
Alignment:
| Q |
1 |
tgcaaagcagaacatatttcatctgctaaacgttgaggctcttgaagtcgttttgcaaatgcttcggcaaccctaggaagcttgcttaagcctacaactc |
100 |
Q |
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|||| ||||||||| | ||||| ||| | ||| |||||||||||||| || ||||||||| | || ||||| | | || |||||||| || ||||||| |
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| T |
19100769 |
tgcagagcagaacaaacttcatttgcaagacgctgaggctcttgaagccgctttgcaaatacatcagcaacacgggagagtttgcttaaaccaacaactc |
19100670 |
T |
|
| Q |
101 |
tttggccagaagggatataacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaag |
200 |
Q |
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| T |
19100669 |
tttcactggagggaacgtaaccgacatgacacttgacctggaatggaagcatgcatgactcgcaataggaaaacaagtcaatatctctaacaatcacaag |
19100570 |
T |
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| Q |
201 |
tccacctactccacc |
215 |
Q |
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| T |
19100569 |
tccacctgctccacc |
19100555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 21961168 - 21961060
Alignment:
| Q |
118 |
taacctacatgacacttgacttgaaatggtaacaagcaagactcacaataagagtagaggtcaatatctctcacaatcacaagtccacctactccacctc |
217 |
Q |
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||||| |||||||||||||| |||||||| | || |||||||| ||||| || | | ||||| |||||| |||| |||||||||||| ||||||| |
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| T |
21961168 |
taaccaacatgacacttgacctgaaatgggagcacgcaagacttgcaataggaaaacaagtcaagatctctggcaataacaagtccacctgctccaccag |
21961069 |
T |
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| Q |
218 |
catgaccaa |
226 |
Q |
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| T |
21961068 |
catgaccaa |
21961060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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