View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8660_low_7 (Length: 247)
Name: NF8660_low_7
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8660_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12219551 - 12219782
Alignment:
| Q |
1 |
gaacatgaattgctatgaataccaccctattctcttgatgctagatattgcagattgaaaaaaggggaagattgtttatacaacattagccagtatgcgc |
100 |
Q |
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| T |
12219551 |
gaacatgaattgctatgaataccaccctattctcttgatgctagatattgcagattgaaaaaaggggaacattgtttatacaactttagccagtatgcgc |
12219650 |
T |
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| Q |
101 |
tgaaagtactgaaaatcaagtaaaaaaccgatctcacggtttctttttcattctaattactt-ggagtactatttgtgtttgatttccaattttggacgg |
199 |
Q |
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| T |
12219651 |
tgaaagtactgaaaatcaagtaaaaaaccgatctcacggtttctttttcattctaattacttgggagtactatttgtgtttgatttccaattttggacgg |
12219750 |
T |
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| Q |
200 |
tcgacactcctccagcctacgtcataattcat |
231 |
Q |
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| T |
12219751 |
tcgacactcctccagcctacgtcataattcat |
12219782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7425990 - 7425767
Alignment:
| Q |
1 |
gaacatgaattgctatgaataccaccctattctcttgatgctagatattgcagattgaaaaaaggggaagattgtttatacaacattagccagtatgcgc |
100 |
Q |
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|||||||||||||| | || |||||| ||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||| || |||| |||||||| |
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| T |
7425990 |
gaacatgaattgctctaaagaccaccttatcctcttgatgctagctactgcagattgaagaaaggggaacattgtttatacgactttagatagtatgcgt |
7425891 |
T |
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| Q |
101 |
tgaaagtactgaaaatcaagtaaaaaaccgatctcacggtttctttttcattctaattacttggagtactatttgtgtttgatttccaattttggacggt |
200 |
Q |
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| T |
7425890 |
tacaagtgctgaaaatcaagtaaaaa--caagctcacgg--tctttttcattctaattac---aaggattatatgtgtttgatttccaattttggactat |
7425798 |
T |
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| Q |
201 |
cgacactcctccagcctacgtcataattcat |
231 |
Q |
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| T |
7425797 |
ccacactccttcaacctatgtgataattcat |
7425767 |
T |
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