View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8660_low_9 (Length: 231)
Name: NF8660_low_9
Description: NF8660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8660_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30230846 - 30231060
Alignment:
| Q |
1 |
tgaaatcaataaaatttagcagaatgttcagcaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcctaagttacgccatctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30230846 |
tgaaatcaataaaatttagcagaatgttcagcaaagacatcgagctgaatgatgacgcttttgctattgcaaaaaccatgactaagttacgccatctttc |
30230945 |
T |
|
| Q |
101 |
gatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttcttgaatctattgtcctgcgagattgtattcatcttgat |
200 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30230946 |
gatgtttggaaacttgcttactaatgttgggttgcatgccattcttgatggttgcccccttcttgaatctattgtcctgcgagattgtattcatcttgat |
30231045 |
T |
|
| Q |
201 |
ttgagtggaagtttg |
215 |
Q |
| |
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||||||||||||||| |
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| T |
30231046 |
ttgagtggaagtttg |
30231060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30223850 - 30224063
Alignment:
| Q |
1 |
tgaaatcaataaaatttagcagaatgttcagcaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcctaagttacgccatctttc |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
30223850 |
tgaaatcattaaaatttagcagaatgttcagtaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcctaagctacgtcatctttc |
30223949 |
T |
|
| Q |
101 |
gatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttcttgaatctattgtcctgcgagattgtattcatcttgat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
30223950 |
gatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttcttgaatctcttgtcctgcgagattgtaatcatcttgat |
30224049 |
T |
|
| Q |
201 |
ttgagtggaagttt |
214 |
Q |
| |
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|||||||||||||| |
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| T |
30224050 |
ttgagtggaagttt |
30224063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 30203002 - 30203208
Alignment:
| Q |
5 |
atcaataaaatttagcagaatgttcagcaaagacatcgagttgaatgatgacgcttttgctattgcaaaaaccatgcctaagttacgccatctttcgatg |
104 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30203002 |
atcactaaaatttagcaggatgttctgcaaagacattgagttgaatgatgacgcaattgctattgcaaaaaccatgcctaagttacgccatctttcgatg |
30203101 |
T |
|
| Q |
105 |
tttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttcttgaatctattgtcctgcgagattgtattcatcttgatttga |
204 |
Q |
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|
||||||||||| || ||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||| | ||||||||||||| |
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| T |
30203102 |
tttggaaacttactcactaatgtcggattgcatgccattcttgatggatgtccccttcttgaatctgttgtcctgcgaaattgtttccatcttgatttga |
30203201 |
T |
|
| Q |
205 |
gtggaag |
211 |
Q |
| |
|
||||||| |
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|
| T |
30203202 |
gtggaag |
30203208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 30240122 - 30240273
Alignment:
| Q |
60 |
tttgctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgccccc |
159 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |||| ||| |||||||||| || |||||||| ||||||| | |||||||||||| ||||| | |
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| T |
30240122 |
tttgctattgcaaacaccatgcctaagctacgccttcttatgatttttggaaactcactcactaatgttgggttgctttccattcttgatgcatgccctc |
30240221 |
T |
|
| Q |
160 |
ttcttgaatctattgtcctgcgagattgtattcatcttgatttgagtggaag |
211 |
Q |
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|
|||||||| | ||| ||||||| ||| || ||||||||||||||||||| |
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| T |
30240222 |
ttcttgaagatcttgatttgcgagaatgtcttaatcttgatttgagtggaag |
30240273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 29699686 - 29699727
Alignment:
| Q |
129 |
gggttgcatgccattcttgatggttgcccccttcttgaatct |
170 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||||||||||| |
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|
| T |
29699686 |
gggttgcttgccattcttaatggttgccctcttcttgaatct |
29699727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 16644095 - 16643946
Alignment:
| Q |
63 |
gctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttc |
162 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||| |||||||| || ||||||| | ||||| || |||||||||| | ||||| |||| |
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| T |
16644095 |
gctattgcaaaaaccatgcctaagcttcgctatctttcaatgattggaaacacactcactaatgatgagttgcttgtcattcttgatcgatgccctcttc |
16643996 |
T |
|
| Q |
163 |
ttgaatctattgtcctgcgagattgtattcatcttgatttgagtggaagt |
212 |
Q |
| |
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| |||| | ||| ||| || |||| ||| ||||||||||||||||||| |
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| T |
16643995 |
tcgaatatcttgacctcagaatttgttttcgtcttgatttgagtggaagt |
16643946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 17618456 - 17618307
Alignment:
| Q |
63 |
gctattgcaaaaaccatgcctaagttacgccatctttcgatgtttggaaacttgcttactaatgtcgggttgcatgccattcttgatggttgcccccttc |
162 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| ||| |||||||| || ||||||| | ||||| || |||||||||| | ||||| |||| |
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| T |
17618456 |
gctattgcaaaaaccatgcctaagcttcgctatctttcaatgattggaaacacactcactaatgatgagttgcttgtcattcttgatcgatgccctcttc |
17618357 |
T |
|
| Q |
163 |
ttgaatctattgtcctgcgagattgtattcatcttgatttgagtggaagt |
212 |
Q |
| |
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| |||| | ||| ||| || |||| ||| ||||||||||||||||||| |
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| T |
17618356 |
tcgaatatcttgacctcagaatttgttttcgtcttgatttgagtggaagt |
17618307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 6046754 - 6046802
Alignment:
| Q |
49 |
atgatgacgcttttgctattgcaaaaaccatgcctaagttacgccatct |
97 |
Q |
| |
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||||||| || ||| |||||||||||||||||||| |||||||||||| |
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| T |
6046754 |
atgatgaggcattttctattgcaaaaaccatgcctgggttacgccatct |
6046802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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