View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8661_high_19 (Length: 246)
Name: NF8661_high_19
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8661_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 24377966 - 24378196
Alignment:
| Q |
1 |
ctttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
24377966 |
ctttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtgtcg |
24378065 |
T |
|
| Q |
101 |
caaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgtgtg |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
24378066 |
caaatccaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgcgtg |
24378165 |
T |
|
| Q |
201 |
gtagcagcggtggtgctagcggtgttgttac |
231 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
24378166 |
gtggcagcggtggtgctagcggtgttgttac |
24378196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 20102866 - 20102651
Alignment:
| Q |
1 |
ctttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaaaacaaattcatacatgaagaaaaaacgaatgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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| T |
20102866 |
ctttccacccccaaatttcttctttttcaacaaacaaaattccaaatttgtatccaaatccatcaacacaaattcatacatgaagaaaaaaagggtgtcg |
20102767 |
T |
|
| Q |
101 |
caaatccaacacatattcatacatgaacaaacccagaaatttaaccctaaatccaacaattaaaatactctctcgttctcctcgattccaaatctgtgtg |
200 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| | | |
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| T |
20102766 |
caaatacaacacagattcatacatgaacaaacccagaaatttaaccccaaatccaacaattaaaatactctctcgttctccttgattccaaatctgcgag |
20102667 |
T |
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| Q |
201 |
gtagcagcggtggtgc |
216 |
Q |
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|||||||||||||||| |
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| T |
20102666 |
gtagcagcggtggtgc |
20102651 |
T |
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