View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8661_high_26 (Length: 240)

Name: NF8661_high_26
Description: NF8661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8661_high_26
NF8661_high_26
[»] chr4 (8 HSPs)
chr4 (13-229)||(9581951-9582167)
chr4 (13-229)||(9587646-9587862)
chr4 (1-229)||(9593732-9593960)
chr4 (13-215)||(9569099-9569301)
chr4 (16-229)||(9602556-9602763)
chr4 (13-229)||(54295049-54295265)
chr4 (53-219)||(37897848-37898014)
chr4 (169-229)||(9574216-9574276)
[»] chr6 (18 HSPs)
chr6 (13-181)||(29012773-29012941)
chr6 (13-176)||(29131254-29131417)
chr6 (45-219)||(29145199-29145373)
chr6 (18-177)||(29300023-29300182)
chr6 (13-177)||(29152098-29152262)
chr6 (45-153)||(32740715-32740823)
chr6 (8-176)||(32744824-32744992)
chr6 (4-176)||(32960693-32960865)
chr6 (13-177)||(34278416-34278580)
chr6 (8-176)||(29124094-29124262)
chr6 (13-219)||(34281821-34282027)
chr6 (93-218)||(34258303-34258428)
chr6 (73-177)||(29137227-29137331)
chr6 (89-176)||(25520027-25520113)
chr6 (97-141)||(19697525-19697569)
chr6 (96-172)||(25319361-25319437)
chr6 (53-177)||(25528826-25528950)
chr6 (96-172)||(26149054-26149130)
[»] chr7 (1 HSPs)
chr7 (17-218)||(42446242-42446442)
[»] scaffold0134 (1 HSPs)
scaffold0134 (13-219)||(16194-16400)
[»] scaffold0613 (1 HSPs)
scaffold0613 (13-219)||(100-306)
[»] scaffold0054 (2 HSPs)
scaffold0054 (13-116)||(33436-33539)
scaffold0054 (13-116)||(39787-39890)
[»] scaffold0129 (2 HSPs)
scaffold0129 (51-111)||(10486-10546)
scaffold0129 (46-145)||(33551-33650)
[»] chr5 (5 HSPs)
chr5 (45-169)||(32642902-32643026)
chr5 (45-109)||(42413999-42414063)
chr5 (45-110)||(39724570-39724635)
chr5 (49-110)||(15807722-15807783)
chr5 (53-121)||(42637357-42637425)
[»] chr3 (1 HSPs)
chr3 (47-111)||(5162455-5162519)
[»] chr1 (1 HSPs)
chr1 (45-116)||(368801-368872)
[»] chr2 (2 HSPs)
chr2 (87-140)||(7429022-7429075)
chr2 (4-116)||(7488712-7488824)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 9581951 - 9582167
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||| ||||||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  9581951 actccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaat 9582050  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    | ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9582051 ttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatga 9582150  T
Q  213 gggtatgtatgttatga 229  Q
    |||||||||||||||||    
T  9582151 gggtatgtatgttatga 9582167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 9587646 - 9587862
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||| ||||||||||||| ||||||||||  |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  9587646 actccaataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaat 9587745  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    | ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9587746 ttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatga 9587845  T
Q  213 gggtatgtatgttatga 229  Q
    |||||||||||||||||    
T  9587846 gggtatgtatgttatga 9587862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9593732 - 9593960
Alignment:
Q  1 cctttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattg 100  Q
    |||||| |||| |||||||| |||||||||| | ||||||||  ||| ||||||||||  ||||||||||| ||||||||||| ||||||||||||||||    
T  9593732 cctttcgtacccactccgatgggacgctcaatgaaagacaacggtccgacaatgaagaaattggtccacgattcctttataccgtattcacccaaaattg 9593831  T
Q  101 atatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatc 200  Q
    |||| ||||||||||| || |||| |||||||||||||||||||| ||||||||| |||||  |||||||||||||||||| ||||||||||||||||||    
T  9593832 atatctgaaaattagttgtctctttatgatatgagatcaatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaagatcgaaacaatc 9593931  T
Q  201 atctaagtatgagggtatgtatgttatga 229  Q
    ||| ||||||||||| |||  ||||||||    
T  9593932 atccaagtatgagggaatgggtgttatga 9593960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 9569301 - 9569099
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||||||||| ||||||||||  |||||||| |||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||    
T  9569301 actccgataggacgctcaatgcaagacaacggtccaacaaggaagagtttggtccacgattccttaatgccatattcacccaaaatcgatatgtgaaaat 9569202  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    ||||||| |||||||||||||||||||| ||||||| ||| || |||||  ||||||||||||||||||  |||| ||||||||||||||| ||||||||    
T  9569201 tagtcgtctcttcatgatatgagatcaacgcaatggccccgtttaacaccaccaagtttatccacaatgcttgaacatcgaaacaatcatccaagtatga 9569102  T
Q  213 ggg 215  Q
    |||    
T  9569101 ggg 9569099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 9602556 - 9602763
Alignment:
Q  16 ccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattag 115  Q
    |||||||||||||||| ||||||||||  ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  9602556 ccgataggacgctcaatgcaagacaacgatccaacattaaagagtttggtccacgactcctttataccgtattcacccaaaattgatatttgaaaattat 9602655  T
Q  116 tcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgaggg 215  Q
    |||| |||| ||||||||||||||||| || ||||||||| |||||  ||||||||||||||||||        | |||||||||||||||||| |||||    
T  9602656 tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaatg------ctttgaaacaatcatctaagtacgaggg 9602749  T
Q  216 tatgtatgttatga 229  Q
    ||||  ||||||||    
T  9602750 tatgggtgttatga 9602763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 54295049 - 54295265
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    |||||||||||| |||||||  ||||||||  |||||||||||| |||||||||||||| ||  | | |||  |||||||||||||||||||||||||||    
T  54295049 actccgataggatgctcaacataagacaacggtccaacaatgaaaagtttggtccacgattctatcacaccgaattcacccaaaattgatatgtgaaaat 54295148  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    |||| |  ||||||||||||||||||||||||||| ||||||| |  || |||||| ||||||||||||  |||| ||| |||||||||||||||| |||    
T  54295149 tagtggactcttcatgatatgagatcaatgcaatgcacccatttagtaccgccaaggttatccacaatgcttgaacatcaaaacaatcatctaagtttga 54295248  T
Q  213 gggtatgtatgttatga 229  Q
    || ||||  ||||||||    
T  54295249 ggatatgggtgttatga 54295265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 37898014 - 37897848
Alignment:
Q  53 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 152  Q
    ||||||||||||||||||| ||||| ||||||  ||| ||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||| |    
T  37898014 tgaagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagtagtcgtctcttcatgatatgagaacaatgcaatggactc 37897915  T
Q  153 attaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatg 219  Q
    ||  ||||| ||||||||||||||||| |  | || ||| |||||||| || |||| ||||||||||    
T  37897914 atataacaccgccaagtttatccacaaagctttaacatcaaaacaatcgtccaagtctgagggtatg 37897848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 9574276 - 9574216
Alignment:
Q  169 tttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatgtatgttatga 229  Q
    |||||||||||||  |||| |||||||| ||||||||||||||||||||||  ||||||||    
T  9574276 tttatccacaatgcttgaacatcgaaactatcatctaagtatgagggtatgggtgttatga 9574216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 29012941 - 29012773
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||||||| || ||||| | |||  | || ||||||||||||||||||||||    
T  29012941 actccgataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaaat 29012842  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatg 181  Q
    ||||||| |||| ||||||||||| |||||||||||||||||| || || |||||||||| ||||||||    
T  29012841 tagtcgtctctttatgatatgagaccaatgcaatggacccatttaataccgccaagtttaaccacaatg 29012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 29131417 - 29131254
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||| |||||||||||||||| ||||||   ||||||||||||||  ||||||||||| || ||||| ||| ||||||||||||||||||||||||||     
T  29131417 actccaataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaaag 29131318  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 176  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  29131317 tagttgtgccttcatgatatgacatcaatgcaatggacacattcaacactgccaagtttatcca 29131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 29145373 - 29145199
Alignment:
Q  45 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 144  Q
    ||||| ||| |||||||||||||| || ||||| |||||  || |||||||||||||||||||||||||||| || | ||||||||||||||||||||||    
T  29145373 tccaagaataaagagtttggtccatgattccttcatacctaatccacccaaaattgatatgtgaaaattagtagtttgttcatgatatgagatcaatgca 29145274  T
Q  145 atggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggtatg 219  Q
    ||| |  |||| | ||| |||| ||||||||||||||  | || |||||||||||||||||||| ||||||||||    
T  29145273 atgaaatcatttatcactgccaggtttatccacaatgcttcaacatcgaaacaatcatctaagtctgagggtatg 29145199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 29300182 - 29300023
Alignment:
Q  18 gataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtc 117  Q
    |||||||||||  ||||||| ||||  ||||||| ||||||| ||||||||||| ||||||||||     |||||||||||||||||||||||| |||||    
T  29300182 gataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtc 29300083  T
Q  118 gtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 177  Q
    || | ||  ||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  29300082 gtctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccac 29300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 29152098 - 29152262
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||||||||||| ||| ||||  |||||| |||||||||||| ||||||| ||  | | |||   || ||||||||||||||   |||||     
T  29152098 actccgataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgattctctgaaaccgagttgacccaaaattgatacacgaaaag 29152197  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 177  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  29152198 tagtcgtctcttcattatatgagatcaatgctatggacccatttaacacacccaagtttatccac 29152262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 32740715 - 32740823
Alignment:
Q  45 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 144  Q
    ||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||| | ||||| |||| ||||||||||||| ||||||||| |||    
T  32740715 tccaacaatgaagagtttggtccacgattcctttatgccgaattcacccaaaattgatacgagaaaagtagttgtgtcttcatgatgtgagatcaaggca 32740814  T
Q  145 atggaccca 153  Q
    ||| |||||    
T  32740815 atgaaccca 32740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 32744824 - 32744992
Alignment:
Q  8 tacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtg 107  Q
    |||| ||||| ||||| || |||||||||| |||   ||||| | ||||||| |||||||| || || || ||||||   ||||||| ||||||||||||    
T  32744824 tacccactccaataggccgatcaacgcaaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtg 32744923  T
Q  108 aaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 176  Q
    |||| ||||||| | ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  32744924 aaaagtagtcgtcttttcataatatgagatcaatgcaatggacccatttaacaccgccaagtttctcca 32744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 32960693 - 32960865
Alignment:
Q  4 ttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgata 103  Q
    ||||| || ||||| |||||||||||||| |||| |||   || |||||| ||||||||| |||| || ||||| |||||   |||| ||||||||||||    
T  32960693 ttcttccccactcccataggacgctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgata 32960792  T
Q  104 tgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 176  Q
      |||||| ||||||| ||||||   | ||||| |||||||||||||||||| | ||| ||||||||||||||    
T  32960793 catgaaaagtagtcgtctcttcaatgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca 32960865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 34278416 - 34278580
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||||||||||| ||| ||||  |||||| |||||||||||| |||| || || || | |||   || ||||||||| ||||   |||||     
T  34278416 actccgataggacgctcaacgtaaggcaacggtccaaccatgaagagtttgatccaagattctttgaaaccgagttgacccaaaatcgatacacgaaaag 34278515  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccac 177  Q
    ||||| | |||| |||||||| ||||||||| ||||||||||| |||||  ||||||||||||||    
T  34278516 tagtcatctctttatgatatgtgatcaatgctatggacccatttaacaccaccaagtttatccac 34278580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 29124262 - 29124094
Alignment:
Q  8 tacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtg 107  Q
    |||| ||||| |||||||| ||||| |||| |||   ||| | | ||||||| |||||||| || ||||| |||||    ||||||| ||||||||| ||    
T  29124262 tacccactccaataggacgatcaacacaaggcaatggtcccatagtgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctg 29124163  T
Q  108 aaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 176  Q
    |||| ||||| | | |||||||||||||| ||||||||||| |||||| ||||| ||||||||| ||||    
T  29124162 aaaagtagtcttcttttcatgatatgagaacaatgcaatggtcccatttaacactgccaagtttctcca 29124094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 34282027 - 34281821
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||||||||||| ||| ||||  |||||| || ||||||||| ||||||| || || | |||   || ||||||||||||||   |||||     
T  34282027 actccgataggacgctcaacgtaaggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaag 34281928  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    || | || |||| | |||||||||||||||| ||| ||||||| |||||  |||||||| |||||  ||  | || ||| ||||||||||||| || ||     
T  34281927 tacttgtctctttacgatatgagatcaatgctatgtacccatttaacaccaccaagtttttccactttgctttaacatcaaaacaatcatctacgtctgg 34281828  T
Q  213 gggtatg 219  Q
    |||||||    
T  34281827 gggtatg 34281821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 34258303 - 34258428
Alignment:
Q  93 caaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcg 192  Q
    ||||||||||||||||||| | || || | ||||| ||||||||  || |||||| ||||||| ||||| |||||||||||||||  ||  | || |||     
T  34258303 caaaattgatatgtgaaaagttgtagttttttcattatatgagagtaaggcaatgaacccatttaacaccgccaagtttatccactttgctttaacatca 34258402  T
Q  193 aaacaatcatctaagtatgagggtat 218  Q
    ||||||||||| | ||||||||||||    
T  34258403 aaacaatcatcaacgtatgagggtat 34258428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 29137331 - 29137227
Alignment:
Q  73 tcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 172  Q
    ||||| ||||||  |||||||||||| ||||  |||||| ||| | | | |||||||||||| |||||||||||||||  ||| |||||  |||||||||    
T  29137331 tccttcataccaacttcacccaaaatagatacatgaaaagtagccatcttttcatgatatgatatcaatgcaatggacaaatttaacaccaccaagttta 29137232  T
Q  173 tccac 177  Q
    |||||    
T  29137231 tccac 29137227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 25520027 - 25520113
Alignment:
Q  89 cacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatcca 176  Q
    |||| |||||||||||||||||| || || | | |||||||| ||||||||| |||||||||| ||| |||||  |||| ||||||||    
T  25520027 cacctaaaattgatatgtgaaaa-taatcatattttcatgatgtgagatcaacgcaatggacctatttaacaccaccaattttatcca 25520113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 19697525 - 19697569
Alignment:
Q  97 attgatatgtgaaaattagtcgtgtcttcatgatatgagatcaat 141  Q
    ||||||||||||||| ||||||| || |||||| |||||||||||    
T  19697525 attgatatgtgaaaagtagtcgtctcatcatgaaatgagatcaat 19697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 25319361 - 25319437
Alignment:
Q  96 aattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 172  Q
    |||||||| ||||||| ||||| | | |||||||||||||||||| ||||   ||||||| |||||  |||||||||    
T  25319361 aattgatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta 25319437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 25528826 - 25528950
Alignment:
Q  53 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggaccc 152  Q
    |||||||| || ||||| | ||||| ||| ||  |||| | ||||||||||||||| || ||||  | | |||||||||| ||||||| ||||||||||     
T  25528826 tgaagagtatgttccaccattccttcatatcagcttcatctaaaattgatatgtgataagtagttatattttcatgatattagatcaaagcaatggacct 25528925  T
Q  153 attaaacacagccaagtttatccac 177  Q
    |||  ||||  |||| |||||||||    
T  25528926 atttgacaccaccaaatttatccac 25528950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 26149054 - 26149130
Alignment:
Q  96 aattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagttta 172  Q
    |||||||| ||||||| ||||| | | |||||||||||||||||| ||||   ||||||| |||||  |||||||||    
T  26149054 aattgatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta 26149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 42446442 - 42446242
Alignment:
Q  17 cgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagt 116  Q
    |||||||||||||||| |||  ||||  ||||||||||| |||||||||||| || ||||| ||| ||  |||||||||||||||||||||||||  ||     
T  42446442 cgataggacgctcaacacaatgcaacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaaa-aagc 42446344  T
Q  117 cgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatgagggt 216  Q
    ||| | ||||||| |||||||||| ||||||||| | || |||||| |||||||||||||| ||     || || ||||||| ||||||||| |||||||    
T  42446343 cgtcttttcatgaaatgagatcaaggcaatggactcgtttaacacaaccaagtttatccacgattctccaacatagaaacaaccatctaagtctgagggt 42446244  T
Q  217 at 218  Q
    ||    
T  42446243 at 42446242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 16194 - 16400
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||| |  ||||||||||||   ||||| | ||||||| ||| |||| || |||||  |||||  |||||||||||||||||||||||||     
T  16194 actccgataggacacctaacgcaagacaatggtccaatagtgaagagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaag 16293  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    ||||| |   ||||||||| ||||||||||||||| || |||| |||   ||||||||||||||  |||  | || ||| |||||||||||||||| |||    
T  16294 tagtccttggttcatgataagagatcaatgcaatgcactcatttaaccgtgccaagtttatccatgatgcttcaacatcaaaacaatcatctaagtttga 16393  T
Q  213 gggtatg 219  Q
    |||||||    
T  16394 gggtatg 16400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 306 - 100
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||  |||||||||||||||   ||||| | ||||| | |||||||| || || ||  | |||  |||||||||||||||||||||||||     
T  306 actccgataggaaactcaacgcaagacaatggtccaatagtgaagtgattggtccatgattcattctttccaatttcacccaaaattgatatgtgaaaag 207  T
Q  113 tagtcgtgtcttcatgatatgagatcaatgcaatggacccattaaacacagccaagtttatccacaatgtgtgaagatcgaaacaatcatctaagtatga 212  Q
    ||||| |   | ||||||| ||||||||||||||| || |||| |||   ||||||||||||||  |||  | || ||| |||||||||||||||| |||    
T  206 tagtccttggtacatgataagagatcaatgcaatgcactcatttaaccatgccaagtttatccaggatgcttcaacatcaaaacaatcatctaagtttga 107  T
Q  213 gggtatg 219  Q
    |||||||    
T  106 gggtatg 100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 33436 - 33539
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    |||| |||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||| || ||   |||||||||||||| ||||| ||||     
T  33436 actctgataggacgctcaacgcaagacaacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctatgtcaaaag 33535  T
Q  113 tagt 116  Q
    ||||    
T  33536 tagt 33539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 39787 - 39890
Alignment:
Q  13 actccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaat 112  Q
    ||||||||||||||||||||||||||||||  ||||||| | ||||||||| ||||||| ||||| || ||   |||||||||||||| ||||||||||     
T  39787 actccgataggacgctcaacgcaagacaacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaag 39886  T
Q  113 tagt 116  Q
    ||||    
T  39887 tagt 39890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 10546 - 10486
Alignment:
Q  51 aatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaa 111  Q
    |||||||||||| ||||| |||||||| | ||||  |||||||||||||||||||||||||    
T  10546 aatgaagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaaa 10486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 33551 - 33650
Alignment:
Q  46 ccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgcaa 145  Q
    |||| ||| |||||||| ||||| |||||||| | ||||  |||||||||||| || ||||||||| ||||| | ||| |||  | ||||||||||||||    
T  33551 ccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagtcatttctacatagtttgagatcaatgcaa 33650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 32643026 - 32642902
Alignment:
Q  45 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaatgca 144  Q
    ||||||||||||||||||| |||| || ||||| | |    |||||| |||||||||||||| |||| ||| | | | ||| ||||||| |||||| |||    
T  32643026 tccaacaatgaagagtttgatccatgattccttcacagttaattcactcaaaattgatatgttaaaagtagccatttgttcttgatatgtgatcaacgca 32642927  T
Q  145 atggacccattaaacacagccaagt 169  Q
    ||||| ||||| ||||| |||||||    
T  32642926 atggatccatttaacaccgccaagt 32642902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 42414063 - 42413999
Alignment:
Q  45 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaa 109  Q
    ||||||||| |||||||| ||||| |||||||||| |||| |||| ||||||||||| |||||||    
T  42414063 tccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaa 42413999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 39724570 - 39724635
Alignment:
Q  45 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaa 110  Q
    |||||||||||||||||| ||||| || || ||||||||   ||| ||||||||||||||||||||    
T  39724570 tccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaa 39724635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 15807722 - 15807783
Alignment:
Q  49 acaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaa 110  Q
    ||||| |||||||||||||| ||||| || |  |||  ||||||||||||||||||||||||    
T  15807722 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 15807783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 42637357 - 42637425
Alignment:
Q  53 tgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagtcgtgt 121  Q
    |||||||||||||||| || ||||| |  ||   ||||||||||||||||||||||||| |||| ||||    
T  42637357 tgaagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaaagtagttgtgt 42637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 5162519 - 5162455
Alignment:
Q  47 caacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaa 111  Q
    ||||| ||||||||||| |||| || ||||| | ||||  |||||||||||||||||||||||||    
T  5162519 caacagtgaagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaaa 5162455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 368872 - 368801
Alignment:
Q  45 tccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgatatgtgaaaattagt 116  Q
    ||||||||||||||||||| |||| || ||||| | ||||  |||||| | |||||||||||||||| ||||    
T  368872 tccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 7429022 - 7429075
Alignment:
Q  87 ttcacccaaaattgatatgtgaaaattagtcgtgtcttcatgatatgagatcaa 140  Q
    ||||||||||| ||||||||||||| ||||| | ||||||| |||||| |||||    
T  7429022 ttcacccaaaactgatatgtgaaaagtagtcttctcttcataatatgaaatcaa 7429075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 7488712 - 7488824
Alignment:
Q  4 ttcttacctactccgataggacgctcaacgcaagacaacactccaacaatgaagagtttggtccacgactcctttataccatattcacccaaaattgata 103  Q
    ||||| ||| ||| |||||||||  |||| ||||||||   ||||||| |||| |||||  |||| || || || | ||||  |||||||||||||||||    
T  7488712 ttcttccctcctctgataggacgtgcaacacaagacaatggtccaacattgaaaagttttttccatgattctttcacaccaatttcacccaaaattgata 7488811  T
Q  104 tgtgaaaattagt 116  Q
    |||||||| ||||    
T  7488812 tgtgaaaagtagt 7488824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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